@rcsb/rcsb-saguaro-app/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js

RCSB 1D Saguaro Web App

"use strict";
Object.defineProperty(exports, "__esModule", { value: true });
exports.RcsbFvChromosomeBuilder = void 0;
const tslib_1 = require("tslib");
const RcsbFvChromosome_1 = require("../RcsbFvModule/RcsbFvChromosome");
const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
class RcsbFvChromosomeBuilder {
    static buildFullChromosome(elementFvId, chrId) {
        return tslib_1.__awaiter(this, void 0, void 0, function* () {
            return yield RcsbFvChromosomeBuilder.buildChromosome(elementFvId, undefined, chrId);
        });
    }
    static buildEntryChromosome(elementFvId, entitySelectId, chromosomeSelectId, entryId) {
        return tslib_1.__awaiter(this, void 0, void 0, function* () {
            return new Promise((resolve, reject) => tslib_1.__awaiter(this, void 0, void 0, function* () {
                const entityInstanceTranslator = yield RcsbRequestContextManager_1.rcsbRequestCtxManager.getEntityToInstance(entryId);
                const result = entityInstanceTranslator.getData();
                const entitySet = new Set();
                result.sort((a, b) => {
                    return parseInt(a.entityId) - parseInt(b.entityId);
                }).forEach(r => {
                    entitySet.add(r.entryId + TagDelimiter_1.TagDelimiter.entity + r.entityId);
                });
                const entityChrTranslate = yield RcsbRequestContextManager_1.rcsbRequestCtxManager.getEntityToChromosome(Array.from(entitySet));
                const entityMap = entityChrTranslate.getData();
                if (entityMap.size == 0) {
                    RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.showMessage(elementFvId, "No genome alignments are available");
                }
                else {
                    const unique = new Set();
                    RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.buildSelectButton(elementFvId, entitySelectId, result.filter(r => {
                        const included = unique.has(r.entryId + TagDelimiter_1.TagDelimiter.entity + r.entityId);
                        unique.add(r.entryId + TagDelimiter_1.TagDelimiter.entity + r.entityId);
                        return entityMap.has(r.entryId + TagDelimiter_1.TagDelimiter.entity + r.entityId) && !included;
                    }).map((e, n) => {
                        const entityId = e.entryId + TagDelimiter_1.TagDelimiter.entity + e.entityId;
                        if (n == 0) {
                            RcsbFvChromosomeBuilder.buildEntityChromosome(elementFvId, chromosomeSelectId, entityId).then((module) => {
                                resolve(module);
                            });
                        }
                        return {
                            name: e.name + " - " + e.taxNames.join(", "),
                            label: entityId + " - " + e.name,
                            shortLabel: entityId,
                            onChange: () => tslib_1.__awaiter(this, void 0, void 0, function* () {
                                yield RcsbFvChromosomeBuilder.buildEntityChromosome(elementFvId, chromosomeSelectId, entityId);
                            })
                        };
                    }), { addTitle: true, dropdownTitle: "ENTITY" });
                }
            }));
        });
    }
    static buildEntityChromosome(elementFvId, elementSelectId, entityId) {
        return tslib_1.__awaiter(this, void 0, void 0, function* () {
            const chrViewer = yield RcsbFvChromosomeBuilder.buildChromosome(elementFvId, entityId, undefined, elementSelectId, { boardConfig: { rowTitleWidth: 160 } });
            const targets = yield chrViewer.getTargets();
            RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.buildSelectButton(elementFvId, elementSelectId, targets.map((chrId, n) => {
                return {
                    label: chrId,
                    name: chrId,
                    shortLabel: chrId,
                    onChange: () => tslib_1.__awaiter(this, void 0, void 0, function* () {
                        yield RcsbFvChromosomeBuilder.buildChromosome(elementFvId, entityId, chrId, elementSelectId);
                    })
                };
            }), { addTitle: false, width: 190, dropdownTitle: "CHROMOSOME" });
            return chrViewer;
        });
    }
    static buildChromosome(elementFvId, entityId, chrId, elementSelectId, additionalConfig) {
        return tslib_1.__awaiter(this, void 0, void 0, function* () {
            return new Promise((resolve, reject) => {
                try {
                    RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.createFv({
                        elementId: elementFvId,
                        fvModuleI: RcsbFvChromosome_1.RcsbFvChromosome,
                        config: {
                            entityId: entityId,
                            chrId: chrId,
                            elementSelectId: elementSelectId,
                            additionalConfig: Object.assign({ rcsbContext: Object.assign(Object.assign({}, (entityId ? TagDelimiter_1.TagDelimiter.parseEntity(entityId) : {})), { chrId: chrId }) }, additionalConfig),
                            resolve: resolve
                        }
                    });
                }
                catch (e) {
                    reject(e);
                }
            });
        });
    }
}
exports.RcsbFvChromosomeBuilder = RcsbFvChromosomeBuilder;