@rcsb/rcsb-saguaro-app

{ "provenance_color_code": { "external": "#DB9128", "rcsb_pdb": "#325880", "rcsb_link": "#5e94c3", "csm": "#1abdcf" }, "merge": [ { "merged_types": ["UNOBSERVED_RESIDUE_XYZ", "UNOBSERVED_ATOM_XYZ"], "type": "UNOBSERVED", "title": "UNMODELED", "display": "block" }, { "merged_types": ["TOPOLOGICAL_DOMAIN", "TRANSMEMBRANE_REGION", "INTRAMEMBRANE_REGION"], "type": "MEMBRANE_TOPOLOGY", "title": "MEMBRANE TOPOLOGY", "display": "block" }, { "merged_types": ["INITIATOR_METHIONINE", "CHAIN", "SIGNAL_PEPTIDE"], "type": "MOLECULE_PROCESSING", "title": "MOLECULE PROCESSING", "display": "block" }, { "merged_types": ["HELIX_P", "HELX_LH_PP_P", "HELX_RH_AL_P", "HELX_RH_3_T_P", "HELX_RH_PI_P"], "type": "HELIX", "title": "HELIX", "display": "block" }, { "merged_types": ["SHEET", "STRN"], "type": "SHEET", "title": "SHEET", "display": "block" }, { "merged_types": ["BEND", "TURN_TY_1_P"], "type": "TURN", "title": "TURN", "display": "block" }, { "merged_types": ["SCOP_2_FAMILY", "SCOP_2_SUPERFAMILY", "SCOP_2_B_SUPERFAMILY", "SCOP"], "type": "ALL_SCOP", "title": "SCOP", "display": "block" } ], "external_data_order": [ "PFAM", "CATH", "ALL_SCOP", "SCOP", "SCOP_2_B_SUPERFAMILY", "SCOP2_FAMILY", "SCOP2_SUPERFAMILY", "ECOD", "IMGT_ANTIBODY_DESCRIPTION", "IMGT_ANTIBODY_DOMAIN_NAME", "IMGT_ANTIBODY_GENE_ALLELE_NAME", "IMGT_ANTIBODY_ORGANISM_NAME", "IMGT_ANTIBODY_PROTEIN_NAME", "IMGT_ANTIBODY_RECEPTOR_DESCRIPTION", "IMGT_ANTIBODY_RECEPTOR_TYPE", "SABDAB_ANTIBODY_ANTIGEN_NAME", "SABDAB_ANTIBODY_NAME", "SABDAB_ANTIBODY_TARGET", "SABDAB_ANTIBODY_HEAVY_CHAIN_SUBCLASS", "SABDAB_ANTIBODY_LIGHT_CHAIN_SUBCLASS", "SABDAB_ANTIBODY_LIGHT_CHAIN_TYPE", "MOLECULE_PROCESSING", "MEMBRANE_TOPOLOGY", "MEMBRANE_SEGMENT", "CHAIN", "INITIATOR_METHIONINE", "SEQUENCE_VARIANT", "GLYCOSYLATION_SITE", "LIPID_MOIETY_BINDING_REGION", "CROSS_LINK", "DISULFIDE_BOND", "METAL_ION_BINDING_SITE", "NUCLEOTIDE_PHOSPHATE_BINDING_REGION", "DNA_BINDING_REGION", "ACTIVE_SITE", "MODIFIED_RESIDUE", "MUTAGENESIS_SITE", "SEQUENCE_CONFLICT", "SITE", "SHORT_SEQUENCE_MOTIF", "ZINC_FINGER_REGION", "PROPEPTIDE", "TRANSMEMBRANE_REGION", "INTRAMEMBRANE_REGION", "TOPOLOGICAL_DOMAIN", "COILED_COIL_REGION", "REPEAT", "DOMAIN", "REGION_OF_INTEREST", "COMPOSITIONALLY_BIASED_REGION", "SPLICE_VARIANT", "NON_TERMINAL_RESIDUE", "TURN", "SIGNAL_PEPTIDE", "CARD_MODEL", "CALCIUM_BINDING_REGION", "PEPTIDE" ], "instance_order": [ "SECONDARY_STRUCTURE", "HELIX_P", "SHEET", "UNOBSERVED", "UNOBSERVED_RESIDUE_XYZ", "UNOBSERVED_ATOM_XYZ", "ZERO_OCCUPANCY_RESIDUE_XYZ", "ZERO_OCCUPANCY_ATOM_XYZ", "RAMACHANDRAN_OUTLIER", "ANGLE_OUTLIER", "BOND_OUTLIER", "ROTAMER_OUTLIER", "RSRZ_OUTLIER", "RSCC_OUTLIER", "RSRCC_OUTLIER", "MOGUL_ANGLE_OUTLIER", "MOGUL_BOND_OUTLIER", "STEREO_OUTLIER", "CIS_PEPTIDE", "BINDING_SITE", "ASA_UNBOUND", "ASA_BOUND", "BURIAL_FRACTION", "BURIED_RESIDUES", "DISULFIDE_BRIDGE", "COVALENT_BOND", "METAL_COORDINATION", "HYDROGEN_BOND" ], "entity_order": [ "ARTIFACT", "MUTATION", "MODIFIED_MONOMER", "HYDROPATHY", "DISORDER", "DISORDER_BINDING" ], "config": [{ "type": "CARD_MODEL", "color": "#4d901b", "display": "block", "title": "CARD" }, { "type": "ECOD", "color": "#42d0b1", "display": "block", "title": "ECOD" }, { "type": "IMGT_ANTIBODY_DOMAIN_NAME", "color": "#3c0d7f", "display": "block", "title": "ANTIBODY DOMAIN" }, { "type": "SABDAB_ANTIBODY_HEAVY_CHAIN_SUBCLASS", "color": "#4c9f0d", "display": "block", "title": "ANTIBODY HEAVY CHAIN", "ignore": true }, { "type": "SABDAB_ANTIBODY_LIGHT_CHAIN_SUBCLASS", "color": "#4c9f0d", "display": "block", "title": "ANTIBODY HEAVY CHAIN", "ignore": true }, { "type": "SABDAB_ANTIBODY_LIGHT_CHAIN_TYPE", "color": "#4c9f0d", "display": "block", "title": "ANTIBODY HEAVY CHAIN", "ignore": true }, { "type": "IMGT_ANTIBODY_DESCRIPTION", "color": "#bf5c0d", "display": "block", "title": "ANTIBODY DESCRIPTION", "ignore": true }, { "type": "IMGT_ANTIBODY_GENE_ALLELE_NAME", "color": "#bf5c0d", "display": "block", "title": "ANTIBODY GENE NAME", "ignore": true }, { "type": "IMGT_ANTIBODY_ORGANISM_NAME", "color": "#bf5c0d", "display": "block", "title": "ANTIBODY ORGANISM NAME", "ignore": true }, { "type": "IMGT_ANTIBODY_PROTEIN_NAME", "color": "#bf5c0d", "display": "block", "title": "ANTIBODY PROTEIN NAME", "ignore": true }, { "type": "IMGT_ANTIBODY_RECEPTOR_DESCRIPTION", "color": "#bf5c0d", "display": "block", "title": "ANTIBODY RECEPTOR DESCRIPTION", "ignore": true }, { "type": "IMGT_ANTIBODY_RECEPTOR_TYPE", "color": "#bf5c0d", "display": "block", "title": "ANTIBODY RECEPTOR TYPE", "ignore": true }, { "type": "SABDAB_ANTIBODY_ANTIGEN_NAME", "color": "#bf5c0d", "display": "block", "title": "ANTIBODY ANTIGEN NAME", "ignore": true }, { "type": "SABDAB_ANTIBODY_NAME", "color": "#bf5c0d", "display": "block", "title": "ANTIBODY NAME", "ignore": true }, { "type": "SABDAB_ANTIBODY_TARGET", "color": "#bf5c0d", "display": "block", "title": "ANTIBODY TARGET", "ignore": true }, { "type": "HOMOLOGY MODELLING", "color": "#2fcc5d", "display": "block", "title": "HOMOLOGY MODELS" }, { "type": "DISORDER_BINDING", "display": "area", "color": { "thresholds": [0.5], "colors": ["#8484FF", "#FF8484"] }, "height": 45, "title": "DISORDERED BINDING", "domain": [0, 1] }, { "type": "HYDROPATHY", "display": "area", "color": { "thresholds": [0], "colors": ["#8484FF", "#FF8484"] }, "height": 45, "title": "HYDROPATHY" }, { "type": "DISORDER", "display": "area", "color": { "thresholds": [0.5], "colors": ["#8484FF", "#FF8484"] }, "height": 45, "title": "DISORDER", "domain": [0, 1] }, { "type": "SEQUENCE_VARIANT", "display": "composite", "color": "#ff6666", "title": "GENOME VARIANT" }, { "type": "ZINC_FINGER_REGION", "display": "block", "color": "#66ff66", "title": "ZINC FINGER" }, { "type": "NUCLEOTIDE_PHOSPHATE_BINDING_REGION", "display": "block", "color": "#ffcc00", "title": "NUCLEOTIDE BINDING" }, { "type": "DNA_BINDING_REGION", "display": "block", "color": "#ff5c9f", "title": "DNA BINDING" }, { "type": "ACTIVE_SITE", "display": "pin", "color": "#ff88cc", "title": "ACTIVE SITE" }, { "type": "COMPOSITIONALLY_BIASED_REGION", "display": "block", "color": "#D58874", "title": "COMPOSITIONAL BIAS" }, { "type": "BINDING_SITE", "display": "pin", "color": "#984657", "title": "BINDING SITE", "key": "name", "addToType": ["feature_id"] }, { "type": "MUTAGENESIS_SITE", "display": "composite", "color": "#b82a80", "title": "MUTAGENESIS" }, { "type": "SEQUENCE_CONFLICT", "display": "composite", "color": "#e80368", "title": "CONFLICT" }, { "type": "METAL_ION_BINDING_SITE", "display": "pin", "color": "#41a754", "title": "METAL BINDING" }, { "type": "CROSS_LINK", "display": "pin", "color": "#0a39af", "title": "CROSS-LINK" }, { "type": "INITIATOR_METHIONINE", "display": "pin", "color": "#e2916d", "title": "INITIATOR METHIONINE" }, { "type": "MODIFIED_RESIDUE", "display": "pin", "color": "#44b8fd", "title": "MODIFIED RESIDUE" }, { "type": "TURN", "display": "block", "color": "#155870", "title": "TURN" }, { "type": "CHAIN", "display": "block", "color": "#ad9c5e", "title": "CHAIN" }, { "type": "DOMAIN", "display": "block", "color": "#715e76", "title": "DOMAIN" }, { "type": "SITE", "display": "composite", "color": "#b5748d", "title": "SITE" }, { "type": "SHORT_SEQUENCE_MOTIF", "display": "block", "color": "#6a508e", "title": "LINEAR MOTIF" }, { "type": "SPLICE_VARIANT", "display": "block", "color": "#f03634", "title": "SEQUENCE SPLICING" }, { "type": "LIPID_MOIETY_BINDING_REGION", "display": "pin", "color": "#06cb7a", "title": "LIPIDATION" }, { "type": "REGION_OF_INTEREST", "display": "block", "color": "#6797be", "title": "REGION" }, { "type": "PROPEPTIDE", "display": "block", "color": "#94d687", "title": "PROPEPTIDE" }, { "type": "UNOBSERVED_RESIDUE_XYZ", "display": "block", "color": "#cccccc", "title": "UNMODELED RESIDUE" }, { "type": "ANGLE_OUTLIER", "display": "area", "color": "#aa33aa", "height": 45, "title": "ANGLE OUTLIER", "transformToNumerical": true }, { "type": "ROTAMER_OUTLIER", "display": "pin", "color": "#33aaaa", "title": "ROTAMER OUTLIER" }, { "type": "RAMACHANDRAN_OUTLIER", "display": "pin", "color": "#cc3333", "title": "RAMACHANDRAN OUTLIER" }, { "type": "RSRCC_OUTLIER", "display": "pin", "color": "#cc33cc", "title": "RSRCC OUTLIER" }, { "type": "BOND_OUTLIER", "display": "area", "color": "#33aa33", "height": 45, "title": "BOND OUTLIER", "transformToNumerical": true }, { "type": "MOGUL_BOND_OUTLIER", "display": "area", "color": "#fcd303", "height": 45, "title": "MOGUL-BOND OUTLIER", "transformToNumerical": true }, { "type": "MOGUL_ANGLE_OUTLIER", "display": "area", "color": "#d303fc", "height": 45, "title": "MOGUL-ANGLE OUTLIER", "transformToNumerical": true }, { "type": "MUTATION", "display": "pin", "color": "#ebae56", "title": "MUTATION" }, { "type": "mutation", "display": "pin", "color": "#ebae56", "title": "MUTATION" }, { "type": "HELIX_P", "display": "block", "color": "#e43372", "title": "HELIX" }, { "type": "HELX_LH_PP_P", "display": "block", "color": "#e43372", "title": "HELIX" }, { "type": "HELX_RH_AL_P", "display": "block", "color": "#e43372", "title": "HELIX" }, { "type": "HELX_RH_3_T_P", "display": "block", "color": "#e43372", "title": "HELIX" }, { "type": "HELX_RH_PI_P", "display": "block", "color": "#e43372", "title": "HELIX" }, { "type": "BEND", "display": "block", "color": "#65cbf3", "title": "BEND" }, { "type": "TURN_TY_1_P", "display": "block", "color": "#0053d6", "title": "TURN" }, { "type": "SHEET", "display": "block", "color": "#f1d23b", "title": "BETA STRAND" }, { "type": "STRN", "display": "block", "color": "#f1d23b", "title": "BETA STRAND" }, { "type": "CATH", "display": "block", "color": "#e4ad56", "title": "CATH" }, { "type": "SCOP", "display": "block", "color": "#455d5a", "title": "SCOP" }, { "type": "SCOP_2_FAMILY", "display": "block", "color": "#455d5a", "title": "SCOP FAMILY" }, { "type": "SCOP_2_B_SUPERFAMILY", "display": "block", "color": "#455d5a", "title": "SCOP SUPERFAMILY" }, { "type": "SCOP_2_SUPERFAMILY", "display": "block", "color": "#455d5a", "title": "SCOP SUPERFAMILY" }, { "type": "PFAM", "display": "block", "color": "#ECACA6", "title": "PFAM" }, { "type": "RSRZ_OUTLIER", "display": "pin", "color": "#3333aa", "title": "RSRZ OUTLIER" }, { "type": "RSCC_OUTLIER", "display": "pin", "color": "#63339a", "title": "RSCC OUTLIER" }, { "type": "UNOBSERVED_ATOM_XYZ", "display": "block", "color": "#b2997f", "title": "UNMODELED ATOM" }, { "type": "ZERO_OCCUPANCY_ATOM_XYZ", "display": "composite", "color": "#aca86a", "title": "ZERO OCCUPANCY ATOM" }, { "type": "CIS_PEPTIDE", "display": "bond", "color": "#761e47", "title": "CIS-PEPTIDE" }, { "type": "HYDROGEN_BOND", "display": "bond", "color": "#76Ae47", "title": "HYDROGEN BOND", "ignore": true }, { "type": "ARTIFACT", "display": "block", "color": "#4c3f0f", "title": "ARTIFACT" }, { "type": "ARTIFACT", "display": "block", "color": "#4c3f0f", "title": "ARTIFACT" }, { "type": "TOPOLOGICAL_DOMAIN", "display": "block", "color": "#853faf", "title": "TOPOLOGICAL DOMAIN" }, { "type": "INTRAMEMBRANE_REGION", "display": "block", "color": "#c58f0f", "title": "INTRAMEMBRANE REGION" }, { "type": "TRANSMEMBRANE_REGION", "display": "block", "color": "#8fc50f", "title": "TRANSMEMBRANE REGION" }, { "type": "REPEAT", "display": "block", "color": "#2ea37b", "title": "REPEAT" }, { "type": "SIGNAL_PEPTIDE", "display": "block", "color": "#2ea3bb", "title": "SIGNAL PEPTIDE" }, { "type": "COILED_COIL_REGION", "display": "block", "color": "#a2ac85", "title": "COILED COIL REGION" }, { "type": "DISULFIDE_BRIDGE", "display": "bond", "color": "#6a534a", "title": "DISULFIDE BRIDGE" }, { "type": "GLYCOSYLATION_SITE", "display": "pin", "color": "#6af34a", "title": "GLYCOSYLATION" }, { "type": "NON_TERMINAL_RESIDUE", "display": "pin", "color": "#6af3fa", "title": "NON-TERMINAL RESIDUE" }, { "type": "MODIFIED_MONOMER", "display": "composite", "color": "#458756", "title": "MODIFIED MONOMER" }, { "type": "MODIFIED_MONOMER", "display": "composite", "color": "#458756", "title": "MODIFIED MONOMER" }, { "type": "ZERO_OCCUPANCY_RESIDUE_XYZ", "display": "composite", "color": "#fca86a", "title": "ZERO OCCUPANCY RESIDUE" }, { "type": "METAL_COORDINATION", "display": "bond", "color": "#aaaada", "title": "METAL COORDINATION" }, { "type": "COVALENT_BOND", "display": "bond", "color": "#aadaaa", "title": "COVALENT BOND" }, { "type": "MEMBRANE_SEGMENT", "display": "block", "color": "#8fc50f", "title": "MEMBRANE SEGMENT", "displayCooccurrence": true }, { "type": "CALCIUM_BINDING_REGION", "display": "block", "color": "#c58f0f", "title": "CALCIUM BINDING" }, { "type": "PEPTIDE", "display": "block", "color": "#cf53df", "title": "PEPTIDE" }, { "type": "STEREO_OUTLIER", "display": "pin", "color": "#cfdf53", "title": "STEREO OUTLIER" }, { "type": "ASA_UNBOUND", "display": "area", "color": { "thresholds": [50], "colors": ["#8484FF", "#FF8484"] }, "height": 45, "title": "ASA UNBOUND" }, { "type": "ASA_BOUND", "display": "area", "color": { "thresholds": [50], "colors": ["#8484FF", "#FF8484"] }, "height": 45, "title": "ASA BOUND" }, { "type": "BURIAL_FRACTION", "display": "block-area", "color": { "colors": "#8484FF", "thresholds": [0.00001, 0.2, 0.4, 0.6, 0.8] }, "title": "BURIAL FRACTION" }, { "type": "BURIED_RESIDUES", "display": "block-area", "color": { "colors": "#44AA44", "thresholds": [0.000001] }, "title": "BURIED RESIDUES" }, { "type": "MA_QA_METRIC_LOCAL_TYPE_PLDDT", "display": "block-area", "color": { "colors": ["#ff7d45", "#ffdb13", "#65cbf3", "#0053d6"], "thresholds": [50, 70, 90] }, "title": "pLDDT" }] }