@rcsb/rcsb-saguaro-app/lib/RcsbSeacrh/FacetStore/UniprotGroupFacetStore.js

RCSB 1D Saguaro Web App

import { ReturnType, Service } from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchEnums";
import { RcsbSearchMetadata } from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchMetadata";
import { CHEM_COMP_FACET, ENTITY_NAME_FACET, EXPERIMENTAL_METHOD_FACET, LIGAND_FACET, ORGANISM_FACET, PFAM_FACET, RELEASE_DATE_FACET, RESOLUTION_FACET, SCOP_FACET, TAXONOMY_FACET, CATH_FACET, ECOD_FACET, ENZYME_CLASS_FACET, GO_FUNCTION_FACET, GO_PROCESS_FACET, GO_COMPONENT_FACET, METHODOLOGY_FACET, TAXONOMY_COUNT_FACET, DISEASE_FACET, INTERPRO_FACET, PHENOTYPE_FACET } from "./SingleFacets";
import { cloneDeep } from "lodash";
class UniprotGroupFacetStore {
    constructor() {
        this.entryFacet = [
            cloneDeep(EXPERIMENTAL_METHOD_FACET),
            cloneDeep(RESOLUTION_FACET),
            cloneDeep(METHODOLOGY_FACET),
            cloneDeep(RELEASE_DATE_FACET),
            cloneDeep(ENZYME_CLASS_FACET)
        ];
        this.instanceFacet = [
            cloneDeep(SCOP_FACET),
            cloneDeep(CATH_FACET),
            cloneDeep(ECOD_FACET),
            cloneDeep(LIGAND_FACET)
        ];
        this.entityFacet = [
            cloneDeep(ORGANISM_FACET),
            cloneDeep(TAXONOMY_FACET),
            cloneDeep(PFAM_FACET),
            cloneDeep(ENTITY_NAME_FACET),
            cloneDeep(GO_FUNCTION_FACET),
            cloneDeep(GO_PROCESS_FACET),
            cloneDeep(GO_COMPONENT_FACET),
            cloneDeep(TAXONOMY_COUNT_FACET)
        ];
        this.uniprotFacet = [
            cloneDeep(DISEASE_FACET),
            cloneDeep(PHENOTYPE_FACET),
            cloneDeep(INTERPRO_FACET)
        ];
        this.nonPolymerFacet = [
            cloneDeep(CHEM_COMP_FACET)
        ];
        this.facetLayoutGrid = [
            RcsbSearchMetadata.RcsbAccessionInfo.DepositDate.path,
            RcsbSearchMetadata.RcsbEntryInfo.ResolutionCombined.path, RcsbSearchMetadata.Exptl.Method.path, RcsbSearchMetadata.RcsbEntryInfo.StructureDeterminationMethodology.path,
            RcsbSearchMetadata.ChemComp.Type.path,
            RcsbSearchMetadata.RcsbEntitySourceOrganism.NcbiScientificName.path, RcsbSearchMetadata.RcsbEntitySourceOrganism.NcbiParentScientificName.path,
            RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Name.path, RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Name.path
        ];
        this.returnType = ReturnType.PolymerEntity;
    }
    getServices() {
        return [Service.Text];
    }
    getFacetService(service) {
        switch (service) {
            case Service.Text:
                return this.entryFacet
                    .concat(this.instanceFacet)
                    .concat(this.entityFacet)
                    .concat(this.uniprotFacet);
            case Service.TextChem:
                return this.nonPolymerFacet;
            case "all":
                return this.entryFacet
                    .concat(this.instanceFacet)
                    .concat(this.entityFacet)
                    .concat(this.nonPolymerFacet)
                    .concat(this.uniprotFacet);
            default:
                return [];
        }
    }
}
export const uniprotGroupFacetStore = new UniprotGroupFacetStore();
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