@rcsb/rcsb-saguaro-app/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js

RCSB 1D Saguaro Web App

import { __awaiter } from "tslib";
import { SequenceReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
import resource from "../../../../RcsbServerConfig/web.resources.json";
import { RcsbAnnotationConstants } from "../../../../RcsbAnnotationConfig/RcsbAnnotationConstants";
import { TrackUtils } from "../TrackFactoryImpl/Helper/TrackUtils";
import { Assertions } from "../../../../RcsbUtils/Helpers/Assertions";
var assertDefined = Assertions.assertDefined;
import { TagDelimiter } from "@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter";
export class SequenceTrackTitleFactory {
    constructor(entityInstanceTranslator) {
        this.entityInstanceTranslator = undefined;
        this.entityInstanceTranslator = entityInstanceTranslator;
    }
    getTrackTitle(alignmentQueryContext) {
        return __awaiter(this, void 0, void 0, function* () {
            var _a, _b, _c;
            let rowTitle;
            if (!alignmentQueryContext.excludeFirstRowLink && alignmentQueryContext.from === SequenceReference.Uniprot) {
                rowTitle = {
                    visibleTex: (_a = alignmentQueryContext.queryId) !== null && _a !== void 0 ? _a : "",
                    url: resource.rcsb_uniprot.url + alignmentQueryContext.queryId,
                    style: {
                        fontWeight: "bold",
                        color: RcsbAnnotationConstants.provenanceColorCode.rcsbLink
                    }
                };
            }
            else if (!alignmentQueryContext.excludeFirstRowLink && alignmentQueryContext.from === SequenceReference.PdbInstance && this.entityInstanceTranslator != null) {
                rowTitle = {
                    visibleTex: alignmentQueryContext.queryId ? this.buildInstanceId(alignmentQueryContext.queryId) : "",
                    style: {
                        fontWeight: "bold",
                    }
                };
            }
            else {
                rowTitle = {
                    visibleTex: (_b = alignmentQueryContext.queryId) !== null && _b !== void 0 ? _b : ((_c = alignmentQueryContext.groupId) !== null && _c !== void 0 ? _c : ""),
                    style: {
                        fontWeight: "bold",
                    }
                };
            }
            return rowTitle;
        });
    }
    getTrackTitlePrefix(alignmentQueryContext) {
        return __awaiter(this, void 0, void 0, function* () {
            var _a;
            return (alignmentQueryContext.from && !alignmentQueryContext.from.includes("PDB")) ? alignmentQueryContext.from.replace("_", " ") + " " + TagDelimiter.sequenceTitle : ((_a = alignmentQueryContext.sequencePrefix) !== null && _a !== void 0 ? _a : "");
        });
    }
    getTrackTitleFlagColor(alignmentQueryContext) {
        return __awaiter(this, void 0, void 0, function* () {
            var _a;
            const queryId = (_a = alignmentQueryContext.queryId) !== null && _a !== void 0 ? _a : alignmentQueryContext.groupId;
            assertDefined(queryId), assertDefined(alignmentQueryContext.from);
            return TrackUtils.getProvenanceConfigFormTarget(queryId, alignmentQueryContext.from).color;
        });
    }
    buildInstanceId(targetId) {
        var _a;
        const labelAsymId = targetId.split(TagDelimiter.instance)[1];
        const authAsymId = (_a = this.entityInstanceTranslator) === null || _a === void 0 ? void 0 : _a.translateAsymToAuth(labelAsymId);
        return (labelAsymId === authAsymId || !authAsymId ? labelAsymId : labelAsymId + "[auth " + authAsymId + "]");
    }
}
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