@rcsb/rcsb-saguaro-app
Version:
RCSB 1D Saguaro Web App
99 lines • 5.52 kB
JavaScript
import { __awaiter } from "tslib";
import { Assertions } from "../../../../RcsbUtils/Helpers/Assertions";
var assertDefined = Assertions.assertDefined;
export class AnnotationBlockManager {
constructor(trackManagerFactory, rcsbAnnotationConfig, polymerEntityInstanceTranslator) {
this.annotationTracks = new Map();
this.trackManagerFactory = trackManagerFactory;
this.rcsbAnnotationConfig = rcsbAnnotationConfig;
this.polymerEntityInstanceTranslator = polymerEntityInstanceTranslator;
}
setData(requestConfig, data) {
return __awaiter(this, void 0, void 0, function* () {
yield this.processAnnotations(requestConfig, data);
this.mergeTracks();
});
}
getTracks() {
var _a;
return (_a = this.orderedTypes()
.filter(type => { var _a, _b; return this.has(type) && ((_b = (_a = this.annotationTracks.get(type)) === null || _a === void 0 ? void 0 : _a.size()) !== null && _b !== void 0 ? _b : 0) > 0; })
.map(type => this.annotationTracks.get(type))
.filter((track) => track != null)) !== null && _a !== void 0 ? _a : [];
}
has(type) {
return this.annotationTracks.has(type);
}
orderedTypes() {
return [
this.rcsbAnnotationConfig.instanceOrder(),
this.rcsbAnnotationConfig.entityOrder(),
this.rcsbAnnotationConfig.uniprotOrder(),
Array.from(this.annotationTracks.keys()).filter(type => !this.rcsbAnnotationConfig.allTypes().has(type))
].flat();
}
processAnnotations(requestConfig, data) {
return __awaiter(this, void 0, void 0, function* () {
var _a, _b;
yield Promise.all(data.map(ann => {
var _a, _b;
return (_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.map((feature) => __awaiter(this, void 0, void 0, function* () {
if (feature)
return yield this.addFeature(requestConfig, ann, feature);
}))) !== null && _b !== void 0 ? _b : [];
}).flat());
(_b = (_a = requestConfig.annotationProcessing) === null || _a === void 0 ? void 0 : _a.computeAnnotationValue) === null || _b === void 0 ? void 0 : _b.call(_a, this.annotationTracks);
});
}
addFeature(requestConfig, ann, feature) {
return __awaiter(this, void 0, void 0, function* () {
var _a, _b, _c, _d, _e;
if (feature.type && ((_a = this.rcsbAnnotationConfig.getConfig(feature.type)) === null || _a === void 0 ? void 0 : _a.ignore))
return;
const type = yield this.rcsbAnnotationConfig.getAnnotationType(requestConfig, ann, feature);
if (!this.annotationTracks.has(type)) {
const o = (_b = this.rcsbAnnotationConfig.getConfig(type)) !== null && _b !== void 0 ? _b : {
type: type,
display: "block" /* RcsbFvDisplayTypes.BLOCK */,
title: type,
provenanceList: new Set()
};
assertDefined(o, `Unknown type: ${type}`);
this.annotationTracks.set(type, this.trackManagerFactory.getTrackManager(type, o, this.polymerEntityInstanceTranslator));
}
const queryId = (_c = requestConfig.queryId) !== null && _c !== void 0 ? _c : requestConfig.groupId;
assertDefined(queryId, "undefined queryId or groupId");
assertDefined(ann.source, "undefined source");
assertDefined(ann.target_id, "undefined target_id");
(_d = this.annotationTracks.get(type)) === null || _d === void 0 ? void 0 : _d.addFeature({
reference: (_e = requestConfig.reference) !== null && _e !== void 0 ? _e : undefined,
queryId: queryId,
source: ann.source,
targetId: ann.target_id,
feature: feature
}, requestConfig.annotationProcessing);
});
}
mergeTracks() {
const typeList = Array.from(this.annotationTracks.keys());
typeList.forEach((type) => {
var _a, _b, _c, _d, _e;
if (this.rcsbAnnotationConfig.isMergedType(type)) {
const newType = (_a = this.rcsbAnnotationConfig.getMergeConfig(type)) === null || _a === void 0 ? void 0 : _a.type;
assertDefined(newType);
const color = (_b = this.rcsbAnnotationConfig.getConfig(type)) === null || _b === void 0 ? void 0 : _b.color;
if (!this.annotationTracks.has(newType)) {
const o = this.rcsbAnnotationConfig.getConfig(newType);
assertDefined(o);
this.annotationTracks.set(newType, this.trackManagerFactory.getTrackManager(newType, o, this.polymerEntityInstanceTranslator));
}
const o = this.annotationTracks.get(type);
if (o && typeof color === "string")
(_c = this.annotationTracks.get(newType)) === null || _c === void 0 ? void 0 : _c.addAll(o, color);
this.rcsbAnnotationConfig.addMultipleProvenance(newType, Array.from((_e = (_d = this.annotationTracks.get(newType)) === null || _d === void 0 ? void 0 : _d.getTrackProvenance()) !== null && _e !== void 0 ? _e : []));
this.annotationTracks.delete(type);
}
});
}
}
//# sourceMappingURL=AnnotationBlockManager.js.map