@rcsb/rcsb-saguaro-app
Version:
RCSB 1D Saguaro Web App
85 lines • 6.62 kB
JavaScript
import { __awaiter } from "tslib";
import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
import { searchRequestProperty } from "../../RcsbSeacrh/SearchRequestProperty";
import { SearchQueryTools as SQT } from "../../RcsbSeacrh/SearchQueryTools";
import { ReturnType } from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchEnums";
import { getReferenceFromGroupProvenance } from "../RcsbFvGroup/GroupTabs/GroupPfvApp";
import { ActionMethods } from "../../RcsbFvUI/Helper/ActionMethods";
import { RcsbFvUniprotBuilder } from "./RcsbFvUniprotBuilder";
import { groupExternalTrackBuilder } from "../../RcsbUtils/TrackGenerators/GroupExternalTrackBuilder";
import { SequenceReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
import { RcsbFvGroupBuilder } from "./RcsbFvGroupBuilder";
import { GroupPfvUI } from "../../RcsbFvUI/GroupPfvUI";
import { PaginationItemComponent } from "../../RcsbFvUI/Components/PaginationItemComponent";
import { FeatureTools } from "../../RcsbCollectTools/FeatureTools/FeatureTools";
export class RcsbFvGroupAlignmentBuilder {
static buildUniprotAlignmentFv(elementId, upAcc, query, additionalConfig) {
return __awaiter(this, void 0, void 0, function* () {
let filterEntities = undefined;
if (query && query.query) {
filterEntities = yield searchRequestProperty.requestMembers(Object.assign(Object.assign({}, query), { query: SQT.addGroupNodeToSearchQuery(GroupProvenanceId.ProvenanceMatchingUniprotAccession, upAcc, query.query), return_type: ReturnType.PolymerEntity }));
}
return RcsbFvUniprotBuilder.buildUniprotFv(elementId, upAcc, Object.assign(Object.assign({}, additionalConfig), { alignmentFilter: filterEntities }));
});
}
static buildGroupAlignmentFv(elementId, groupProvenance, groupId, query, additionalConfig) {
return __awaiter(this, void 0, void 0, function* () {
var _a, _b, _c, _d, _e, _f, _g, _h, _j;
let entityCount = -1;
let filterEntities = undefined;
if (query && query.query) {
filterEntities = yield searchRequestProperty.requestMembers(Object.assign(Object.assign({}, query), { query: SQT.addGroupNodeToSearchQuery(groupProvenance, groupId, query.query), return_type: ReturnType.PolymerEntity }));
entityCount = filterEntities.length;
}
else {
entityCount = yield searchRequestProperty.requestCount({ query: SQT.searchGroupQuery(groupProvenance, groupId), return_type: ReturnType.PolymerEntity });
}
additionalConfig = Object.assign(Object.assign({}, additionalConfig), { page: Object.assign({ first: 50, after: 0 }, additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.page), alignmentFilter: filterEntities, externalTrackBuilder: FeatureTools.mergeTrackBuilders(groupExternalTrackBuilder(groupProvenance), additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.externalTrackBuilder) });
// SequenceReference.PdbEntity && SequenceReference.Uniprot are needed to add row prefixes
const pfvArgs = [
getReferenceFromGroupProvenance(groupProvenance),
groupId,
SequenceReference.PdbEntity,
SequenceReference.Uniprot
];
let pfv = Object();
switch (groupProvenance) {
case GroupProvenanceId.ProvenanceSequenceIdentity:
pfv = yield RcsbFvGroupBuilder.buildGroupAlignmentFv(elementId, ...pfvArgs, additionalConfig);
break;
case GroupProvenanceId.ProvenanceMatchingUniprotAccession:
pfv = yield RcsbFvUniprotBuilder.buildUniprotAlignmentFv(elementId, groupId, additionalConfig);
break;
}
const sequenceIdentityCallback = ActionMethods.paginationCallback();
const uniprotCallback = ActionMethods.paginationCallback();
const uiComp = {
component: PaginationItemComponent,
props: {
count: entityCount,
after: (_b = (_a = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.page) === null || _a === void 0 ? void 0 : _a.after) !== null && _b !== void 0 ? _b : 0,
first: (_d = (_c = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.page) === null || _c === void 0 ? void 0 : _c.first) !== null && _d !== void 0 ? _d : 50,
stateChange: (state, prevState) => {
switch (groupProvenance) {
case GroupProvenanceId.ProvenanceSequenceIdentity:
sequenceIdentityCallback(elementId, pfv, RcsbFvGroupBuilder.buildGroupAlignmentFv, pfvArgs, Object.assign(Object.assign({}, additionalConfig), { page: {
first: state.first,
after: state.after
}, excludeLogo: true }));
break;
case GroupProvenanceId.ProvenanceMatchingUniprotAccession:
uniprotCallback(elementId, pfv, RcsbFvUniprotBuilder.buildUniprotAlignmentFv, [groupId], Object.assign(Object.assign({}, additionalConfig), { page: {
first: state.first,
after: state.after
} }));
break;
}
}
}
};
GroupPfvUI.fvUI(GroupPfvUI.addBootstrapElement(elementId), (_f = (_e = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.externalUiComponents) === null || _e === void 0 ? void 0 : _e.replace) !== null && _f !== void 0 ? _f : (entityCount > ((_h = (_g = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.page) === null || _g === void 0 ? void 0 : _g.first) !== null && _h !== void 0 ? _h : 50) ? [uiComp] : []).concat(((_j = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.externalUiComponents) === null || _j === void 0 ? void 0 : _j.add) ? additionalConfig.externalUiComponents.add : []));
return pfv;
});
}
}
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