@rcsb/rcsb-saguaro-3d
Version:
RCSB Molstar/Saguaro Web App
120 lines (119 loc) • 7.7 kB
JavaScript
"use strict";
Object.defineProperty(exports, "__esModule", { value: true });
exports.MsaPfvManagerFactory = void 0;
const tslib_1 = require("tslib");
const PfvManagerFactoryInterface_1 = require("../PfvManagerFactoryInterface");
const MsaRowTitleComponent_1 = require("./MsaPfvComponents/MsaRowTitleComponent");
const MsaRowMarkComponent_1 = require("./MsaPfvComponents/MsaRowMarkComponent");
const MsaUiSortComponent_1 = require("./MsaPfvComponents/MsaUiSortComponent");
const MsaUiSequenceAlignmentDownload_1 = require("./MsaPfvComponents/MsaUiSequenceAlignmentDownload");
const MsaUiStructureDownload_1 = require("./MsaPfvComponents/MsaUiStructureDownload");
const RcsbIdParser_1 = require("../../../../Utils/RcsbIdParser");
class MsaPfvManagerFactory {
getPfvManager(config) {
return new MsaPfvManager(config);
}
}
exports.MsaPfvManagerFactory = MsaPfvManagerFactory;
class MsaPfvManager extends PfvManagerFactoryInterface_1.AbstractPfvManager {
constructor(config) {
super(config);
this.config = config;
}
create() {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
var _a, _b, _c, _d;
const args = [this.rcsbFvDivId, ...this.config.pfvArgs, Object.assign(Object.assign({}, this.additionalConfig), { boardConfig: this.boardConfigContainer.get(), externalTrackBuilder: {
filterAlignments: (data) => {
var _a, _b, _c, _d;
const visAlignment = (_c = (_b = (_a = this.config.alignmentResponseContainer) === null || _a === void 0 ? void 0 : _a.get()) === null || _b === void 0 ? void 0 : _b.target_alignments) === null || _c === void 0 ? void 0 : _c.filter(ta => { var _a; return (ta === null || ta === void 0 ? void 0 : ta.target_id) && ((_a = this.config.stateManager.assemblyModelSate.getMap()) === null || _a === void 0 ? void 0 : _a.has(ta.target_id)); });
const otherAlignment = (_d = data.alignments.target_alignments) === null || _d === void 0 ? void 0 : _d.filter(ta => { var _a; return (ta === null || ta === void 0 ? void 0 : ta.target_id) && !((_a = this.config.stateManager.assemblyModelSate.getMap()) === null || _a === void 0 ? void 0 : _a.has(ta.target_id)); });
return new Promise(resolve => resolve(Object.assign(Object.assign({}, data.alignments), { target_alignments: (visAlignment !== null && visAlignment !== void 0 ? visAlignment : []).concat(otherAlignment !== null && otherAlignment !== void 0 ? otherAlignment : []) })));
}
}, trackConfigModifier: {
alignment: (alignmentContext, targetAlignment, alignmentResponse, alignmentIndex) => new Promise((resolve) => {
var _a, _b;
const alignmentMod = {
rowMark: {
externalRowMark: {
component: MsaRowMarkComponent_1.MsaRowMarkComponent,
props: {
rowRef: (0, RcsbIdParser_1.parseEntityOrInstance)(targetAlignment.target_id),
stateManager: this.stateManager
}
},
clickCallback: () => this.loadAlignment(alignmentContext, targetAlignment)
},
externalRowTitle: {
rowTitleComponent: MsaRowTitleComponent_1.MsaRowTitleComponent,
rowTitleAdditionalProps: {
alignmentContext,
targetAlignment,
stateManager: this.stateManager,
titleClick: () => this.loadAlignment(alignmentContext, targetAlignment)
}
},
metadata: {
targetId: targetAlignment.target_id
}
};
if ((_b = (_a = this.additionalConfig) === null || _a === void 0 ? void 0 : _a.trackConfigModifier) === null || _b === void 0 ? void 0 : _b.alignment)
this.additionalConfig.trackConfigModifier.alignment(alignmentContext, targetAlignment, alignmentResponse, alignmentIndex).then((rc) => {
resolve(Object.assign(Object.assign({}, rc), alignmentMod));
});
else
resolve(alignmentMod);
})
}, beforeChangeCallback: () => {
this.config.pfvChangeCallback({ context: { id: this.config.id } });
}, externalUiComponents: ((_b = (_a = this.additionalConfig) === null || _a === void 0 ? void 0 : _a.externalUiComponents) === null || _b === void 0 ? void 0 : _b.replace) ? {
replace: (_d = (_c = this.additionalConfig) === null || _c === void 0 ? void 0 : _c.externalUiComponents) === null || _d === void 0 ? void 0 : _d.replace
} : {
add: [{
component: MsaUiSortComponent_1.MsaUiSortComponent,
props: {
rcsbFvContainer: this.rcsbFvContainer,
stateManager: this.stateManager
}
}, {
component: MsaUiSequenceAlignmentDownload_1.MsaUiSequenceAlignmentDownload,
props: {
rcsbFvContainer: this.rcsbFvContainer,
stateManager: this.stateManager
}
}, {
component: MsaUiStructureDownload_1.MsaUiStructureDownload,
props: {
stateManager: this.stateManager
}
}]
} })];
this.module = yield this.config.buildMsaAlignmentFv(...args);
this.rcsbFvContainer.set(this.module);
yield this.readyStateLoad();
return this.module;
});
}
readyStateLoad() {
return tslib_1.__awaiter(this, void 0, void 0, function* () {
var _a;
const alignments = yield this.rcsbFvContainer.get().getAlignmentResponse();
if (alignments.target_alignments && alignments.target_alignments.length > 0 && typeof ((_a = alignments.target_alignments[0]) === null || _a === void 0 ? void 0 : _a.target_id) === "string") {
this.loadAlignment({ queryId: this.config.id }, alignments.target_alignments[0], "auto");
}
});
}
loadAlignment(alignmentContext, targetAlignment, who = "user") {
if (typeof targetAlignment.target_id === "string") {
this.stateManager.next({
type: "model-change",
view: "1d-view",
data: {
pdb: (0, RcsbIdParser_1.parseEntityOrInstance)(targetAlignment.target_id),
targetAlignment,
who
}
});
}
}
}