@rcsb/rcsb-saguaro-3d
Version:
RCSB Molstar/Saguaro Web App
133 lines • 7.87 kB
JavaScript
import { __awaiter } from "tslib";
import { AbstractCallbackManager } from "../CallbackManagerFactoryInterface";
import { AlignmentMapper as AM } from "../../../../Utils/AlignmentMapper";
import { TagDelimiter } from "@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter";
export class MsaCallbackManagerFactory {
constructor(config) {
this.pluginLoadParamsDefinition = config.pluginLoadParamsDefinition;
this.alignmentResponseContainer = config.alignmentResponseContainer;
}
getCallbackManager(config) {
return new MsaCallbackManager(Object.assign(Object.assign({}, config), { loadParamRequest: this.pluginLoadParamsDefinition, alignmentResponseContainer: this.alignmentResponseContainer }));
}
}
class MsaCallbackManager extends AbstractCallbackManager {
constructor(config) {
super(config);
this.targetIds = {};
this.alignmentResponseContainer = config.alignmentResponseContainer;
}
featureClickCallback(e) {
return __awaiter(this, void 0, void 0, function* () {
var _a;
const alignment = yield ((_a = this.rcsbFvContainer.get()) === null || _a === void 0 ? void 0 : _a.getAlignmentResponse());
if (alignment) {
const regions = this.getModelRegions(e ? [e] : [], alignment, Array.from(this.stateManager.assemblyModelSate.getMap().keys()), "query");
this.stateManager.next({ type: "feature-click", view: "1d-view", data: regions });
}
});
}
highlightHoverCallback(selection) {
return __awaiter(this, void 0, void 0, function* () {
yield this.select(selection, "hover");
});
}
modelChangeCallback(defaultAsymId, defaultOperatorName) {
return Promise.resolve(undefined);
}
pfvChangeCallback(params) {
return __awaiter(this, void 0, void 0, function* () {
var _a, _b, _c, _d;
if (typeof this.rcsbFvContainer.get() === "undefined")
return;
const alignmentResponse = yield ((_a = this.rcsbFvContainer.get()) === null || _a === void 0 ? void 0 : _a.getAlignmentResponse());
if (!this.alignmentResponseContainer.get() && alignmentResponse) {
this.alignmentResponseContainer.set(alignmentResponse);
(_b = alignmentResponse.target_alignments) === null || _b === void 0 ? void 0 : _b.forEach(ta => { if (ta === null || ta === void 0 ? void 0 : ta.target_id)
this.targetIds[ta.target_id] = true; });
}
else if (alignmentResponse) {
const newTargetAlignments = (_c = alignmentResponse.target_alignments) === null || _c === void 0 ? void 0 : _c.filter(ta => {
if (ta && ta.target_id && !this.targetIds[ta.target_id]) {
this.targetIds[ta.target_id] = true;
return true;
}
});
if (newTargetAlignments && this.alignmentResponseContainer.get()) {
const ar = this.alignmentResponseContainer.get();
ar.target_alignments = (_d = ar.target_alignments) === null || _d === void 0 ? void 0 : _d.concat(newTargetAlignments);
this.alignmentResponseContainer.set(ar);
}
}
});
}
innerStructureViewerSelectionChange(mode) {
return __awaiter(this, void 0, void 0, function* () {
var _a, _b;
const allSel = this.stateManager.selectionState.getSelection(mode);
const alignment = yield ((_a = this.rcsbFvContainer.get()) === null || _a === void 0 ? void 0 : _a.getAlignmentResponse());
let regions = [];
if (alignment) {
allSel.forEach(sel => {
var _a;
const chain = (_a = this.stateManager.assemblyModelSate.getModelChainInfo(sel.modelId)) === null || _a === void 0 ? void 0 : _a.chains.find(ch => (ch.entityId == TagDelimiter.parseEntity(sel.modelId).entityId || ch.label == TagDelimiter.parseInstance(sel.modelId).instanceId) && ch.label == sel.labelAsymId);
if (chain) {
regions = regions.concat(this.getModelRegions(sel.regions.map(r => ({
begin: r.begin,
end: r.end
})), alignment, [sel.modelId], "target"));
}
});
}
(_b = this.rcsbFvContainer.get()) === null || _b === void 0 ? void 0 : _b.getFv().setSelection({ mode, elements: regions.map(r => r.region) });
});
}
innerPfvSelectionChange(selection) {
return __awaiter(this, void 0, void 0, function* () {
yield this.select(selection, "select");
});
}
select(selection, mode) {
return __awaiter(this, void 0, void 0, function* () {
var _a, _b, _c;
const alignment = yield ((_a = this.rcsbFvContainer.get()) === null || _a === void 0 ? void 0 : _a.getAlignmentResponse());
if (alignment) {
const regions = this.getModelRegions(selection, alignment, Array.from((_c = (_b = this.stateManager.assemblyModelSate.getMap()) === null || _b === void 0 ? void 0 : _b.keys()) !== null && _c !== void 0 ? _c : []), "query");
this.stateManager.selectionState.clearSelection(mode);
if (regions.length > 0) {
this.stateManager.selectionState.selectFromMultipleRegions("set", regions, mode);
}
this.stateManager.next({ type: mode == "select" ? "selection-change" : "hover-change", view: "1d-view" });
}
});
}
getModelRegions(selection, alignment, modelList, pointer) {
const regions = [];
modelList.forEach(modelId => {
var _a;
const chain = (_a = this.stateManager.assemblyModelSate.getModelChainInfo(modelId)) === null || _a === void 0 ? void 0 : _a.chains.find(ch => ch.entityId == TagDelimiter.parseEntity(modelId).entityId || ch.label == TagDelimiter.parseInstance(modelId).instanceId);
if (!chain)
return;
const labelAsymId = chain.label;
const operatorName = chain.operators[0].name;
if (!labelAsymId || !operatorName)
return;
selection.forEach(s => {
var _a, _b, _c, _d, _e, _f, _g, _h, _j;
const alignedRegions = ((_c = (_b = (_a = alignment.target_alignments) === null || _a === void 0 ? void 0 : _a.find(ta => (ta === null || ta === void 0 ? void 0 : ta.target_id) === modelId)) === null || _b === void 0 ? void 0 : _b.aligned_regions.filter((o) => o != null)) !== null && _c !== void 0 ? _c : []).concat((_g = (_f = (_e = (_d = this.alignmentResponseContainer.get()) === null || _d === void 0 ? void 0 : _d.target_alignments) === null || _e === void 0 ? void 0 : _e.find(ta => (ta === null || ta === void 0 ? void 0 : ta.target_id) === modelId)) === null || _f === void 0 ? void 0 : _f.aligned_regions.filter((o) => o != null)) !== null && _g !== void 0 ? _g : []);
if (!alignedRegions)
return;
(_j = AM.mapRangeToRegionList({ begin: s.begin, end: (_h = s.end) !== null && _h !== void 0 ? _h : s.begin }, alignedRegions, pointer)) === null || _j === void 0 ? void 0 : _j.forEach(region => {
regions.push({
modelId,
labelAsymId,
operatorName,
region: Object.assign(Object.assign({}, region), { source: "sequence" })
});
});
});
});
return regions;
}
}
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