@madie/cql-antlr-parser/dist/test/testCql.js

Antlr Parsing of CQL in typescript

"use strict";
Object.defineProperty(exports, "__esModule", { value: true });
exports.cqlDefineWithKeyWord = exports.cqlDefineWithNoName = exports.aggregateQuery = exports.relatedContextRetrieve = exports.cqlFluentFunctions = exports.cqlWithUsedContext = exports.cqlWithUsedCodeAndCodeSystem = exports.cqlWithUsedDefines = exports.cqlWithUsedParam = exports.cqlWithSyntaxErrors = exports.qdmTestCql = exports.fhirTestCql = exports.missingCodeSystemCql = exports.simpleDefinitionCql = void 0;
const simpleDefinitionCql = `
  //MAT-4844: Test Define with no quotes
  library ScreeningPrediabetesFHIR version '0.0.000'
  using QICore version '4.1.1'
  using FHIR version '4.0.1'

  context Patient
  // ehnicity comment
  define "SDE Ethnicity":
    SDE."SDE Ethnicity"

  /* multi line 
  */
  define InitialPopulation:
    "VTE Prophylaxis by Medication Administered or Device Applied"

  /* 
    @author: john doe 
    @description: this is Numerator 
  */
  define "Numerator":
    "VTE Prophylaxis by Medication Administered or Device Applied"

  define "VTE Prophylaxis by Medication Administered or Device Applied":
    ( ["MedicationAdministration": medication in "Low Dose Unfractionated Heparin for VTE Prophylaxis"] VTEMedication
      where VTEMedication.status = 'completed'
    )
    
  /*
multiline comment outside of a function with multiple
rows
*/

define function "Denominator Observation"(Encounter "Encounter, Performed" ):
  // inside of definition to ignore
  duration in hours of Encounter.relevantPeriod

// comment outside of function
// next line comment
define function "Numerator Observation"(Encounter "Encounter, Performed" ):
  duration in hours of Encounter.relevantPeriod
`;
exports.simpleDefinitionCql = simpleDefinitionCql;
const missingCodeSystemCql = `library TJCOverall_FHIR4 version '4.0.000'

using FHIR version '4.0.0'
include FHIRHelpers version '4.0.0' called FHIRHelpers

codesystem "LOINC": 'urn:oid:2.16.840.1.113883.6.1'

code "Birth date": '21112-8' display 'Birth date'

define "Initial Population":
  true
`;
exports.missingCodeSystemCql = missingCodeSystemCql;
const fhirTestCql = `library TJCOverall_FHIR4 version '4.0.000'

using FHIR version '4.0.0'
// NOTE: BTR 2019-07-30: Updated version dependencies
include FHIRHelpers version '4.0.0' called FHIRHelpers
include MATGlobalCommonFunctions_FHIR4 version '4.0.000' called Global
include SupplementalDataElements_FHIR4 version '1.0.0' called SDE

codesystem "LOINC": 'urn:oid:2.16.840.1.113883.6.1'
codesystem "CPT:2018": 'urn:oid:2.16.840.1.113883.6.12'
codesystem "SNOMEDCT:2017-09": 'http://snomed.info/sct/731000124108'  version 'http://snomed.info/sct/731000124108/version/201709'

valueset "Acute Pharyngitis (1)": 'https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113883.3.464.1003.102.12.1011.1'
valueset "Acute Pharyngitis (2)": 'https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113883.3.464.1003.102.12.1011.2'
valueset "Encounter Inpatient SNOMEDCT Value Set": 'https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113883.3.666.7.307|20160929'
valueset "Face-to-Face Interaction": 'https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113883.3.464.1004.101.12.1048|MU2%20Update@202016-04-01'

code "Venous foot pump, device (physical object)": '442023007' from "SNOMED-CT"
parameter "Measurement Period" Interval<DateTime>
  default Interval[@2019-01-01T00:00:00.0, @2020-01-01T00:00:00.0)
  
context Patient

define "SDE Ethnicity":
  SDE."SDE Ethnicity"

define "SDE Payer":
  SDE."SDE Payer"

define "SDE Race":
  SDE."SDE Race"

define "SDE Sex":
  SDE."SDE Sex"

//MAT-4844: Test Define with no quotes
define InitialPopulation:
  true   

define "Denominator Exclusion":
    TJC."Ischemic Stroke Encounters with Discharge Disposition"
        union TJC."Comfort Measures during Hospitalization"
      
define "Encounter Performed":
    ["Encounter, Performed"] EP
        where EP.relevantPeriod not null
        
define "Antithrombotic Not Given at Discharge":
    ["MedicationRequest": medication in "Antithrombotic Therapy"] NoAntithromboticDischarge
    where NoAntithromboticDischarge.doNotPerform is true
            and (NoAntithromboticDischarge.reasonCode in "Medical Reason"
                or NoAntithromboticDischarge.reasonCode in "Patient Refusal")
      //Note: expressed as an or with equivalence semantics pending resolution of potential CQL issue.
      and exists (NoAntithromboticDischarge.category C where FHIRHelpers.ToConcept(C) ~ Global."Community" or FHIRHelpers.ToConcept(C) ~ Global."Discharge")
      and NoAntithromboticDischarge.status = 'completed'
      and NoAntithromboticDischarge.intent = 'order'     
`;
exports.fhirTestCql = fhirTestCql;
const qdmTestCql = `
library PreventiveCareScreeningFollowUpPlan version '0.0.000'
using QDM version '5.6'
valueset "Adolescent depression screening assessment": 'urn:oid:2.16.840.1.113762.1.4.1260.162'
valueset "Adolescent depression screening assessment with version":  'urn:oid:2.16.840.1.113762.1.4.1260.162' version 'urn:hl7:version:20240307'
`;
exports.qdmTestCql = qdmTestCql;
const cqlWithSyntaxErrors = `library TJCOverall_FHIR4 version '4.0.000'

using FHIR version '4.0.0'
// NOTE: BTR 2019-07-30: Updated version dependencies
include FHIRHelpers version '4.0.0' called FHIRHelpers
includess MATGlobalCommonFunctions_FHIR4 version '4.0.000' called Global
include SupplementalDataElements_FHIR4 version '1.0.0' called SDE

codesystem "LOINC": 'urn:oid:2.16.840.1.113883.6.1'
codesystem "CPT:2018": 'urn:oid:2.16.840.1.113883.6.12'
codesystem "SNOMEDCT:2017-09": 'http://snomed.info/sct/731000124108'  version 'http://snomed.info/sct/731000124108/version/201709'

valueset "Acute Pharyngitis (1)": 'https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113883.3.464.1003.102.12.1011.1'
valuesetss "Acute Pharyngitis (2)": 'https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113883.3.464.1003.102.12.1011.2'
valueset "Encounter Inpatient SNOMEDCT Value Set": 'https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113883.3.666.7.307|20160929'
valueset "Face-to-Face Interaction": 'https://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113883.3.464.1004.101.12.1048|MU2%20Update@202016-04-01'

code "Venous foot pump, device (physical object)": '442023007' from "SNOMED-CT"
parameter  Interval<DateTime>
  default Interval[@2019-01-01T00:00:00.0, @2020-01-01T00:00:00.0)
 
context Patient

define "SDE Ethnicity":
  SDE."SDE Ethnicity"

define "SDE Payer":
  SDE."SDE Payer"

define "SDE Race":
  SDE."SDE Race"

define "SDE Sex":
  SDE."SDE Sex"       
`;
exports.cqlWithSyntaxErrors = cqlWithSyntaxErrors;
const cqlWithUsedParam = `
valueset "Statin Allergen": 'http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113762.1.4.1110.42' 
parameter "Measurement Period" Interval<DateTime>
define "Has Allergy to Statin":
  exists ([AllergyIntolerance: "Statin Allergen"] StatinAllergy
                where StatinAllergy.onset during "Measurement Period")
`;
exports.cqlWithUsedParam = cqlWithUsedParam;
const cqlWithUsedDefines = `
valueset "Dementia Medications": 'http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113883.3.464.1003.196.11.1517'
define "Initial Population":
  exists("Dementia Medications Dispensed")
define "Dementia Medications Dispensed":
  [MedicationDispense: "Dementia Medications"] MedicationDispense
              where MedicationDispense.status in { 'active', 'completed', 'on-hold' }
`;
exports.cqlWithUsedDefines = cqlWithUsedDefines;
const cqlWithUsedCodeAndCodeSystem = `
codesystem "ICD10CM": 'http://hl7.org/fhir/sid/icd-10-cm'
code "Encounter for palliative care": 'Z51.5' from "ICD10CM" display 'Encounter for palliative care'
define "Dementia Medications Dispensed":
  [MedicationDispense: "Encounter for palliative care"] MedicationDispense
              where MedicationDispense.status in { 'active', 'completed', 'on-hold' }

define "Initial Population":
  exists("Dementia Medications Dispensed")
`;
exports.cqlWithUsedCodeAndCodeSystem = cqlWithUsedCodeAndCodeSystem;
const cqlWithUsedContext = `
valueset "Dementia Medications": 'http://cts.nlm.nih.gov/fhir/ValueSet/2.16.840.1.113883.3.464.1003.196.11.1517'
context Patient
define "Dementia Medications Dispensed":
  [MedicationDispense: "Dementia Medications"] MedicationDispense
                where MedicationDispense.status in { 'active', 'completed', 'on-hold' } 
                and Patient.gender in { 'male', 'female', 'unknown' }
`;
exports.cqlWithUsedContext = cqlWithUsedContext;
const cqlFluentFunctions = `
valueset "Diabetes Mellitus": 'https://cts.nlm.nih.gov/fhir/ValueSet/melitus'
valueset "Condition Active": 'https://cts.nlm.nih.gov/fhir/ValueSet/active'
valueset "Condition Recurrence": 'https://cts.nlm.nih.gov/fhir/ValueSet/recurring'
valueset "Condition Confirmed": 'https://cts.nlm.nih.gov/fhir/ValueSet/recurring'
define "Diabetes Conditions":
  [Condition: "Diabetes Mellitus"]

define "Confirmed and Active or Recurring Diabetes Conditions":
  "Diabetes Conditions".confirmed().activeOrRecurring()
 
define fluent function "confirmed"(Conditions List<Condition>):
  Conditions C where C.verificationStatus ~ "Condition Confirmed"

define fluent function "activeOrRecurring"(Conditions List<Condition>):
  Conditions C
    where C.clinicalStatus ~ "Condition Active"
      or C.clinicalStatus ~ "Condition Recurrence"
`;
exports.cqlFluentFunctions = cqlFluentFunctions;
const relatedContextRetrieve = `
valueset "Mother Relationship": 'https://cts.nlm.nih.gov/fhir/ValueSet/mother_relationship'
valueset "Birth Date": 'https://cts.nlm.nih.gov/fhir/ValueSet/birth_date'
context Patient

define "Mother": singleton from ([RelatedPerson: "Mother Relationship"])

define "Estimated Due Date":
  Last(
    ["Mother" -> "Observation": "Estimated Due Date Exam"] Exam
      sort by effective
  )

define "Gestational Age in Days at Birth":
  (280 - (duration in days between "Estimated Due Date" and "Birth Date")) div 7
`;
exports.relatedContextRetrieve = relatedContextRetrieve;
const aggregateQuery = `
define FactorialOfFive:
  ({ 1, 2, 3, 4, 5 }) Num
    aggregate Result starting 1: Result * Num
`;
exports.aggregateQuery = aggregateQuery;
const cqlDefineWithNoName = `
define :
  true
`;
exports.cqlDefineWithNoName = cqlDefineWithNoName;
const cqlDefineWithKeyWord = `
define on or:
  true
`;
exports.cqlDefineWithKeyWord = cqlDefineWithKeyWord;
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