@longevity-genie/biostratum-mcp-plugin/scripts/fetch-tools.ts

ElizaOS MCP plugin for biostratum - a comprehensive MCP composer and adapter solution

#!/usr/bin/env bun

import { Client } from "@modelcontextprotocol/sdk/client/index.js";
import { StdioClientTransport } from "@modelcontextprotocol/sdk/client/stdio.js";
import { writeFileSync, mkdirSync } from "fs";
import { join } from "path";

interface ServerConfig {
  name: string;
  command: string;
  args: string[];
}

interface ToolResult {
  name: string;
  description: string;
  inputSchema: any;
}

interface SuccessResult {
  server: string;
  toolCount: number;
  tools: ToolResult[];
  fetchedAt: string;
}

interface ErrorResult {
  server: string;
  error: string;
  fetchedAt: string;
}

type ServerResult = SuccessResult | ErrorResult;

const servers: ServerConfig[] = [
  {
    name: "biothings",
    command: "uvx",
    args: ["biothings-mcp"]
  },
  {
    name: "opengenes", 
    command: "uvx",
    args: ["opengenes-mcp"]
  },
  {
    name: "gget",
    command: "uvx", 
    args: ["gget-mcp"]
  },
  {
    name: "synergy-age",
    command: "uvx",
    args: ["synergy-age-mcp"]
  },
  {
    name: "pharmacology",
    command: "uvx",
    args: ["pharmacology-mcp", "stdio"]
  }
];

async function fetchServerTools(serverConfig: ServerConfig): Promise<ServerResult> {
  console.log(`\n🔌 Connecting to ${serverConfig.name} server...`);
  
  let client: Client | null = null;
  let transport: StdioClientTransport | null = null;

  try {
    // Create client
    client = new Client(
      {
        name: "ElizaOS Tool Fetcher",
        version: "1.0.0",
      },
      {
        capabilities: {},
      }
    );

    // Create transport
    transport = new StdioClientTransport({
      command: serverConfig.command,
      args: serverConfig.args,
      stderr: "pipe",
    });

    // Connect with timeout
    const connectPromise = client.connect(transport);
    const timeoutPromise = new Promise((_, reject) => 
      setTimeout(() => reject(new Error("Connection timeout after 30 seconds")), 30000)
    );
    
    await Promise.race([connectPromise, timeoutPromise]);
    console.log(`✅ Connected to ${serverConfig.name} server`);

    // Fetch tools
    console.log(`📋 Fetching tools from ${serverConfig.name}...`);
    const response = await client.listTools();
    
    const tools = response?.tools || [];
    console.log(`📊 Found ${tools.length} tools in ${serverConfig.name}`);

    // Log tool names for preview
    tools.forEach(tool => {
      console.log(`  - ${tool.name}: ${tool.description || 'No description'}`);
    });

    return {
      server: serverConfig.name,
      toolCount: tools.length,
      tools: tools.map(tool => ({
        name: tool.name,
        description: tool.description || '',
        inputSchema: tool.inputSchema || {}
      })),
      fetchedAt: new Date().toISOString()
    };

  } catch (error) {
    console.error(`❌ Failed to connect to ${serverConfig.name}:`, error instanceof Error ? error.message : String(error));
    return {
      server: serverConfig.name,
      error: error instanceof Error ? error.message : String(error),
      fetchedAt: new Date().toISOString()
    };
  } finally {
    // Fire-and-forget cleanup to prevent any blocking
    // Use setImmediate to ensure cleanup runs after current execution
    setImmediate(async () => {
      try {
        if (transport) {
          transport.close().catch(() => {}); // Ignore cleanup errors
        }
        if (client) {
          client.close().catch(() => {}); // Ignore cleanup errors  
        }
      } catch (cleanupError) {
        // Silently ignore cleanup errors
      }
    });
  }
}

async function main() {
  console.log("🚀 Biostratum MCP Tool Fetcher");
  console.log("===============================");

  // Create output directory
  const outputDir = join(process.cwd(), "data", "tools");
  mkdirSync(outputDir, { recursive: true });

  // Fetch tools from all servers in parallel
  console.log(`🚀 Starting parallel connections to ${servers.length} servers...`);
  const startTime = Date.now();
  
  const results: ServerResult[] = await Promise.all(
    servers.map(serverConfig => fetchServerTools(serverConfig))
  );
  
  const fetchTime = Date.now();
  console.log(`⚡ All tools fetched in ${fetchTime - startTime}ms`);

  // Save individual server results
  console.log(`💾 Saving results to files...`);
  const saveStartTime = Date.now();
  
  results.forEach((result, index) => {
    const serverConfig = servers[index];
    const filename = join(outputDir, `${serverConfig.name}-tools.json`);
    writeFileSync(filename, JSON.stringify(result, null, 2));
    console.log(`💾 Saved ${serverConfig.name} tools to: ${filename}`);
  });

  // Save combined results
  const combinedFilename = join(outputDir, "all-biostratum-tools.json");
  const combinedResult = {
    fetchedAt: new Date().toISOString(),
    servers: results
  };
  
  writeFileSync(combinedFilename, JSON.stringify(combinedResult, null, 2));
  console.log(`💾 Saved combined results to: ${combinedFilename}`);
  
  const saveTime = Date.now();
  console.log(`💾 File saving completed in ${saveTime - saveStartTime}ms`);

  // Print summary
  console.log("\n📈 Summary:");
  console.log("===========");
  results.forEach(result => {
    if ('tools' in result) {
      console.log(`${result.server}: ${result.toolCount} tools`);
    } else {
      console.log(`${result.server}: Error - ${result.error}`);
    }
  });

  const totalTime = Date.now();
  console.log(`\n⏱️  Total execution time: ${totalTime - startTime}ms`);
  console.log(`   - Tool fetching: ${fetchTime - startTime}ms`);
  console.log(`   - File saving: ${saveTime - saveStartTime}ms`);
  console.log(`   - Other operations: ${(totalTime - startTime) - (fetchTime - startTime) - (saveTime - saveStartTime)}ms`);

  console.log("\n✨ Tool fetching completed!");
}

// Run the script
main().catch(error => {
  console.error("💥 Script failed:", error);
  process.exit(1);
});