@lifeomic/cli

# Changelog All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/), and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ## [Unreleased] ### Removed - **BREAKING:** Removed `lo tasks create-foundation-xml-import`. The Foundation XML task-service pipeline was removed ([FLE-346](https://lifeomic.atlassian.net/browse/FLE-346), [task-service#199](https://github.com/lifeomic/task-service/pull/199)). Use the GA4GH replacement flow. ## [13.9.0] - 2023-01-04 ### Added - Added a `lo genomics ingestions` command set with the following commands - `lo genomics ingestions list` Lists genomic ingestions for a project - `lo genomics ingestions get` Gets a genomic ingestions - `lo genomics ingestions create-foundation` Creates a Foundation ingestion - `lo genomics ingestions create-caris` Creates a Caris ingestion - `lo genomics ingestions create-foundation-bam` Creates a Foundation BAM ingestion - `lo genomics ingestions create-caris-bam` Creates a Caris BAM ingestion ## [13.8.1] - 2022-07-25 ### Fixed - Added `maxBodyLength` for file uploads ## [13.8.0] - 2022-05-24 ### Changed - `lo surveys export-responses` now supports an optional `query` parameter ## [13.7.0] - 2022-04-06 ### Changed - Updated how project is published ## [13.6.0] - 2021-10-06 ### Changed - `project` is now required for `lo fhir list` ## [13.5.0] - 2021-07-22 ### Added - Added `lo auth -r` to support token refresh ## [13.4.0] - 2021-07-22 ### Added - Added `--skipPrompts` flag to `lo setup` command to enable unattended scripting of environment changes - `lo setup -e prod-us --skipPrompts` does not give follow up prompts ## [13.3.0] - 2021-04-05 ### Added - Added a new `lo ocr get-suggestions` command to get suggestions from an OCR document ## [13.2.0] - 2021-03-18 ### Changed - Updated the tool add-version command to use multi-part uploads when the file is larger than 5MB ## [13.1.0] - 2021-03-15 ### Changed - Updated the tool creation command to use multi-part uploads when the file is larger than 5MB ## [13.0.0] - 2021-03-12 ### Changed - Updated creating a cohort to require a subjectId array instead of a dsl query ## [12.5.0] - 2021-03-02 ### Added - Added a command to cancel running data lake queries. - `data-lake cancel-query` Cancels a running data lake query ## [12.4.0] - 2021-02-17 ### Added - Added additional Insights commands to get details of scheduled indexing jobs. - `lo insights list-jobs` Fetches all scheduled Insights indexing jobs in the account - `lo insights get-job` Fetch the details of a single Insights indexing job ## [12.3.0] - 2021-01-26 ### Added - Added support for our upcoming federal government environment ## [12.2.0] - 2020-12-09 ### Added - Added a `lo tools` command set with the following sub commands: - `lo tools create` Creates a tool in the tool registry - `lo tools add-version` Adds a version to an existing tool - `lo tools delete` Deletes a tool or a specific version of a tool - `lo tools download` Downloads the tool file - `lo tools get` Returns meta data on a tool - `lo tools list` Using optional fitlers, returns a list of tools - Added two sub commands to `lo workflows`: - `lo workflows describe` Returns the expected inputs of a workflow and the data type of the input - `lo workflows run` Runs a workflow using a tool in the tool registry ## [12.1.1] - 2020-11-20 ### Fixed - Fixed the `genomics list-tests` command to list tests by project using the `--limit` option. ## [12.1.0] - 2020-11-03 ### Changed - Updated the `genomics list-tests` command to list tests by project by leaving off the `[subjectId]` parameter. ## [12.0.0] - 2020-10-08 ### Changed - Updated `lo ocr` sub commands: - Removed `delete-document`, `get-document` and `list-documents`. These operations can be performed using `fhir` and `fhir-search` commands. - Updated `create-config` to read configuration from JSON file ## [11.9.0] - 2020-10-02 ### Changed - Replaced the `pass-filter` option in the `genomics create-genomic-set` command with `pass-only`. ## [11.8.1] - 2020-09-22 ### Fixed - Fixed issue with 11.8.0 release. ## [11.8.0] - 2020-09-21 ### Added - Added a new `lo genomics update-test` command to update a genomic test. ## [11.7.0] - 2020-09-10 ### Added - Added an optional argument `--output-project-folder` to the `lo workflows create <datasetId>` command that allows for specifying the folder within PHC that the workflow should push all output files. ### Fixed - Corrected the argument `workflow-dependencies-file-ids` in the `lo workflows create <datasetId>` to be optional instead of required ## [11.6.0] - 2020-08-07 ### Added - Added a `lo tasks retry <taskId>` command. ## [11.5.0] - 2020-08-03 ### Added - Added a `lo genomics get-test` command. - Addded ablity to read `lo fhir sql` statement from stdin. ## [11.4.0] - 2020-07-06 ### Added - Added a `lo ocr` command set with the following sub commands: - Configuration: - `lo ocr create-config` Create OCR configuration for a project - `lo ocr delete-config` Delete an OCR configuration - `lo ocr get-config` Fetch configuration information for a project - OCR documents: - `lo ocr create-document` Create an OCR-document (starts OCR pipeline) - `lo ocr delete-document` Delete an OCR document - `lo ocr get-document` Fetch OCR document - `lo ocr list-documents` List OCR documents in a project ## [11.3.0] - 2020-06-25 ### Added - Added a `lo tasks create-nantomics-bulk-import` command. ## [11.2.0] - 2020-06-22 ### Added - Upgraded project dependencies. ## [11.1.0] - 2020-06-05 ### Added - Added a `surveys export-responses` command to export the responses for a survey in CSV format. ## [11.0.0] - 2020-05-11 ### Changed - Updated the workflows commands sets to use the new workflows api, this includes removing `workflows` from the command and updating the arguments. Refer to help on the individual commands for more details - Updated the `create-*` ingest commands to validate that the optional date provided is in an ISO standard format. ### Removed - The `workflow-template` and `workflow-parameter` command sets were removed. This functionality is now covered by the updated workflows commands ## [10.3.0] - 2020-04-20 ### Changed - Replaced TravisCI build with Github Actions. ## [10.2.0] - 2020-03-06 ### Added - Added a `body-site` options to the `genomics` creat set commands. ## [10.1.0] - 2020-03-05 ### Added - Added a `sequence-id` option to the `genomics create-genomic-set` command. ## [10.0.2] - 2020-03-04 ### Fixed - Force `fsevents` dependency bump to avoid node-pregyp error noise on install - Fix bin links so `lo` is available in path after install ## [10.0.1] - 2020-02-27 ### Added - Support double-click of `life-export` on MacOS. ## [10.0.0] - 2020-02-26 ### Added - Created `life-export` / `life-export.exe` and added it to the [release](https://github.com/lifeomic/cli/releases) archive bundles. This command allows a user to extract their LIFE data in one step after authenticating with their credentials. ## [9.15.0] - 2020-02-18 ### Added - Added storage of ID token from `lo auth` command. ## [9.14.3] - 2020-02-12 ### Added - Added `fhir me` command for getting one's own FHIR Patient records. ## [9.14.2] - 2020-02-12 ### Fixed - Fixed the alias for the `rgel-file` option to be `f` in `lo genomics create-rna-quantification-set` to keep it from conflicting with other options. ## [9.14.1] - 2020-02-05 ### Added - Fixed a big in the `lo genomics list...` commands in which using the `-l` option was throwing an error - Updated help information in the `lo genomics list...` commands for `-l` and `-n` to be more descriptive on limits ## [9.14.0] - 2020-02-05 ### Added - Added the `lo genomics create-readgroup-set` command. ## [9.13.1] - 2020-01-27 ### Fixed - Fixed an issue with `lo files mv` and trying to rename files in nested folders. ## [9.13.0] - 2020-01-21 ### Added - Added ability to use auth tokens in the `PHC_ACCESS_TOKEN` and `PHC_REFRESH_TOKEN` environment variables. ## [9.12.0] - 2019-12-09 ### Added - Added missing options to various `lo genomics create-` commands. ## [9.11.0] - 2019-12-04 ### Added - Added `--strip-path` and `--remote-path` to `files upload` command. ## [9.10.0] - 2019-12-04 ### Added - Added the `--send-failed-to` option to the `tasks create-ashion-import`, `tasks create-foundation-xml-import`, and `tasks create-nantomics-vcf-import` commands. ## [9.9.0] - 2019-11-14 ### Added - Added the `--update-sample` option to the `lo genomics create-genomic-set` command. ## [9.8.0] - 2019-11-06 ### Added - Added the following commands to fetch data lake table schemas. - `lo data-lake get-schema` Fetch the schema of a single table - `lo data-lake list-queries` Fetch the schema of each table ### Updated - Updated the `query` commands to hit the new `/v1/analytics/data-lake/query` endpoint. ## [9.7.0] - 2019-10-30 ### Added - Added the following commands to issue and fetch the data of queries against the analytics data lake. - `lo data-lake query` Submits a query to the Lifeomic data-lake API - `lo data-lake get-query` Fetch a single query execution - `lo data-lake list-queries` List the query executions in the project ## [9.6.0] - 2019-10-16 ### Added - Added the following commands which allow usage of the new workflow api which implements a subset of the [Common Workflow Language](https://www.commonwl.org) standard - Handling of cwl json templates - `lo workflows create-template` Add the CWL json template - `lo workflows get-template` Returns a CWL json template - `lo workflows list-templates` Returns all CWL json templates belonging to a project - `lo workflows delete-template` Removes the CWL json template from a project - Handling of cwl json parameters - `lo workflows create-parameters` Add a CWL json parameter set - `lo workflows get-parameters` Returns a CWL json parameter set - `lo workflows list-parameters` Returns all CWL json parameter sets belonging to a project - `lo workflows delete-parameters` Removes the CWL json parameter set from a project - Handling of cwl json parameters - `lo workflows build-workflow` Generates and starts a workflow with a combination of a template and parameter resources - `lo workflows create-workflow` Allows a full CWL JSON template and parameter set to be read into the command directly - `lo workflows get-workflow` Returns a workflow - `lo workflows list-workflows` Returns all workflows belonging to a project - `lo workflows delete-workflows` Removes the workflow from the project ## [9.5.0] - 2019-10-03 ### Added - Added the following optional argument to the tasks `create-ashion-import` - `--re-ingest-file` Allows an Ashion file to be re-ingested ## [9.4.0] - 2019-09-26 ### Added - Added the following optional arguments to the tasks `create-ashion-import`, `create-foundation-xml-import`, and `create-nantomics-vcf-import` - `--body-site` the code indicating the body site of the sample - `--body-site-system` the system from which the body site code is derived - `--body-site-display` a display value for the body site code ## [9.3.0] - 2019-09-25 ### Added - Added the `lo genomics list-tests` command to lists genomic tests for a subject - Addded the `lo genomics delete-test` command to delete a test for a subject ## [9.2.0] - 2019-09-09 ### Added - Added the same arguments to the following `genomics` commands: `list-copy-number-sets`, `list-readgroup-sets`, `list-rna-quantification-sets`, `list-structural-variant-sets` and `list-variant-sets` - `--missing-patient` returns sets that are missing patientIds - `--missing-sequence` returns sets that are missing sequenceIds - `--missing-samples` returns sets that are missing sample names - `--missing-fhir-sequence` returns sets that have no associate FHIR Sequence resource - `--only-ids` causes the return to be only a an array of ids, intended to help with scripting tasks ## [9.1.0] - 2019-09-06 ### Added - Added the `lo tasks create-ashion-import` command to ingest Ashion test files ## [9.0.0] - 2019-09-05 ### Updated - Updated the `create-foundation-task` and `create-nantomics-task` commands to make the argument `test-type` required instead of optional - Updated the `genomics` list commands to allow filtering by `sequenceId` or `patientId` ## [8.3.1] - 2019-08-13 ### Fixed - `lo files upload` fixed bug with uploading empty files. ## [8.3.0] - 2019-08-13 ### Added - `lo insights schedule-job` command to schedule Insights rebuild jobs. ## [8.2.1] - 2019-08-10 ### Fixed - `lo` yaml output will now go deeper rather than cutting off at 3 levels deep ## [8.2.0] - 2019-07-24 ### Added - `--re-ingest-file` flag to `lo tasks create-foundation-xml-import` and `lo tasks create-nantomics-vcf-import`. This flag will allow re-ingesting of a file even if a sequence already exists for it. The current files for the sequence will be overwritten. ([#101](https://github.com/lifeomic/cli/pull/101)) ## [8.1.0] - 2019-07-12 ### Added - `lo genomics create-copy-number-set` kicks off the workflow to start indexing of a CNV/copy number file ([#97](https://github.com/lifeomic/cli/pull/97)) - `lo genomics create-structural-variant-set` kicks off the workflow to start indexing of a FNV/structural variant file ([#97](https://github.com/lifeomic/cli/pull/97)) - `lo genomics delete-copy-number-set` deletes the copy number genomic set for the provided set id ([#97](https://github.com/lifeomic/cli/pull/97)) - `lo genomics delete-structural-variant-set` deletes the structural variant genomic set for the provided set id ([#97](https://github.com/lifeomic/cli/pull/97)) - `lo genomics get-copy-number-set` gets the copy number genomic set for the provided set id ([#97](https://github.com/lifeomic/cli/pull/97)) - `lo genomics get-structural-variant-set` gets the structural variant genomic set for the provided set id ([#97](https://github.com/lifeomic/cli/pull/97)) - `lo genomics list-copy-number-sets` gets the copy number genomic sets for the provided data set id ([#97](https://github.com/lifeomic/cli/pull/97)) - `lo genomics list-structural-variant-sets` gets the structural variant genomic set for the provided data set id ([#97](https://github.com/lifeomic/cli/pull/97)) - `--use-existing-sequence` flag to `lo tasks create-foundation-xml-import` and `lo tasks create-nantomics-vcf-import`. This flag when used with any `--indext-type` besides `all` will attempt to add the currently ingest variant type to an existing sequence. ([#96](https://github.com/lifeomic/cli/pull/96)) - `lo fhir ingest` now allows for CSV content to be passed to stdin with a `--csv` flag which points to a configuration file. See `examples/csv_input/observations.csv` as an example of input, and `examples/csv_format/csv_observation_input.json` as an example of configuration. ([#99](https://github.com/lifeomic/cli/pull/99)) ## [8.0.3] - 2019-06-24 ### Fixed - `lo` will now no longer colorize YAML output when it is going to a pipe ([#93](https://github.com/lifeomic/cli/pull/93)) ## [8.0.2] - 2019-06-24 ### Fixed - `lo auth` will only listen on local interfaces. ([#92](https://github.com/lifeomic/cli/pull/92)) ## [8.0.1] - 2019-06-23 ### Fixed - `lo fhir list <type> --json` will once again produce valid JSON (i.e. an array of objects) ([#89](https://github.com/lifeomic/cli/pull/89)) ## [8.0.0] - 2019-06-18 ### Changed - `lo genomics create-genomic-set` has new required parameters. ([#88](https://github.com/lifeomic/cli/pull/88)) ## [7.6.0] - 2019-05-30 ### Added - `lo files mv <source> <dest>` to allow one to rename a file or a set of files within a project. ([#86](https://github.com/lifeomic/cli/pull/86)) ## [7.5.0] - 2019-05-30 ### Added - `lo tasks create-foundation-xml-import` now provides for structural variant ingestion by means of a new value for the `index-type` flag, `fnv` - `lo tasks create-nantomics-vcf-import` now provides for structural variant ingestion by means of an optional new flag `upload-type` which allows selection of either short variant file or structural variant file ## [7.4.0] - 2018-05-29 ### Added - Added `lo layouts` commands that allow one to manage subject viewer layouts. ([#80](https://github.com/lifeomic/cli/pull/80) from [@taylordeatri](https://github.com/taylordeatri)) - Added `--jsonLine` global option to use JSON Line format. ([#80](https://github.com/lifeomic/cli/pull/80) from [@taylordeatri](https://github.com/taylordeatri)) - Added `--csv` option to `lo fhir list` command to output resources as CSV. ([#80](https://github.com/lifeomic/cli/pull/80) from [@taylordeatri](https://github.com/taylordeatri)) ### Fixed - Upgraded Axios version to fix issue with proxy support when using `https_proxy` environment variable. ([#80](https://github.com/lifeomic/cli/pull/80) from [@taylordeatri](https://github.com/taylordeatri)) ## [7.3.0] - 2018-05-28 ### Added - `lo files download` now provides recrusive download support to allow one to download many files from a project. ([#85](https://github.com/lifeomic/cli/pull/85)) ## [7.2.1] - 2018-05-22 ### Fixed - `lo files upload` now properly formats the file names when operating on a Windows OS. ([#83](https://github.com/lifeomic/cli/pull/83)) ## [7.2.0] - 2018-05-10 ### Added - `lo setup` now provides support for providing settings using arguments. ([#78](https://github.com/lifeomic/cli/pull/78) from [@bmamlin](https://github.com/bmamlin)) ## [7.1.3] - 2018-05-09 ### Fixed - Worked around an issue that was causing `lo auth` to fail when using SAML SSO. ## [7.1.2] - 2018-04-19 ### Fixed - Fixed issue with batching over JSON array type objects with `lo ontologies import`. ## [7.1.1] - 2018-04-18 ### Fixed - Fixed issue with importing JSON array type objects with `lo ontologies import`. ## [7.1.0] - 2018-04-16 ### Added - Added `ontologies import` command for uploading ontologies to a project. ## [7.0.0] - 2018-04-09 ### Changed - Replaced the `page-size` and `next-page-token` options with a `limit` option for the `lo files ls` command. - Replaced the YAML printer library with one that can handle larger lists ### Added - Added a `limit` option to the following commands which allows them to fetch as many pages needed to hit the limit: `lo files list`, `lo genomics list-variant-sets`, `lo genomics list-readgroup-sets`, and `list-rna-quantification-sets` ## [6.15.5] - 2018-03-29 ### Fixed - Fixed issue with uploading very large files with `lo files upload`. ## [6.15.4] - 2018-03-28 ### Fixed - Added more error checking and request retries around `lo files upload`. ## [6.15.3] - 2018-03-27 ### Fixed - Improved the usability of `lo setup` and `lo auth` by improving some of the prompts and available choices to make things more obvious. ## [6.15.2] - 2018-03-22 ### Fixed - Add retries for requests issued with `lo files upload` ## [6.15.1] - 2018-03-14 ### Fixed - `lo fhir list` will now properly handle tag queries using `--query` ## [6.15.0] - 2018-02-28 ### Added - `lo fhir ingest` will now retry HTTP 429 (too many requests) errors ## [6.14.0] - 2018-02-20 ### Added - Added `--indexed-date` option to `genomics create-genomic-set`, `create-foundation-xml-import`, and `create-nantomics-vcf-import` - Added `files ls` command for browsing files within a project with folder support ## [6.13.0] - 2018-12-21 ### Added - Added `--move-after-upload` option to `files upload` ## [6.12.0] - 2018-12-03 ### Added - Added `status` options to the genomics commands ## [6.11.0] - 2018-10-25 ### Added - Added `test-type` and `performer-id` options to the genomics commands ## [6.10.0] - 2018-10-25 ### Added - Added Content-MD5 checks for s3 file uploads ### Fixed - Renamed the `--dataset` option on `lo fhir ingest` to `--project` to match the other `fhir` commands. - Added retries on `5xx` errors to the `fhir` commands. ## [6.9.0] - 2018-10-12 ### Added - Added `--sequence-name` option to `create-foundation-xml-import` command ## [6.8.0] - 2018-10-11 ### Added - Added `--sequence-type` option to `create-genomic-set` command ## [6.7.0] - 2018-10-02 ### Added - Added support for managing and using cohorts ### Fixed - `lo fhir get` now prints the the FHIR resource rather than `null` ## [6.6.0] - 2018-09-24 ### Changed - `lo tasks create-nantomics-vcf-import` - removed report file name argument and replaced with file prefix. ## [6.5.0] - 2018-09-14 ### Added - Added new options for `create-nantomics-vcf-import` ## [6.4.0] - 2018-09-13 ### Changed - `lo tasks create-foundation-xml-import` - removed report file name argument and replaced with file id. ## [6.3.0] - 2018-08-24 ### Added - Added `create-nantomics-vcf-import` ## [6.2.0] - 2018-08-24 ### Changed - Project id is now a required argument to the `lo fhir ingest` command. ## [6.1.3] - 2018-08-23 ### Fixed - Fixed `lo accounts list` command. ## [6.1.2] - 2018-08-20 ### Fixed - Properly handle errors for `lo fhir ingest` by stopping the ingest at the first error. ## [6.1.1] - 2018-08-17 ### Fixed - Prevent `lo fhir ingest` from doing parallel POST requests and causing rate limiting and other issues. ## [6.1.0] - 2018-08-17 ### Added - Added `create-foundation-xml-import` ## [6.0.2] - 2018-08-13 ### Fixed - Fixed `lo setup` to add back missing API key options. ## [6.0.0] - 2018-08-10 ### Changed - This releases changes the entire command structure. Commands like `lo files-list` are now `lo files list`. You can new view help like so: `lo --help`, `lo <command> --help`, `lo <command> <subcommand> --help`. - `fhir ingest' command supports json-lines and will stream and batch the resources so it can support arbitrarily large ingests. ## [5.10.0] - 2018-08-08 ### Changed - FHIR commands now request strict handling which makes the FHIR server do strict validation on ingest and searches ## [5.9.1] - 2018-08-06 ### Fixed - Fixed `lo files-upload` to make it work better for larger files. ## [5.9.0] - 2018-08-03 ### Added - Added `api-keys` commands and the ability to use an API key for authentication - Added `--id` option to file-upload ## [5.8.0] - 2018-07-31 ### Added - Added `--delete-after-upload` option to `files-upload` ### Changed - Updated `files-upload` to ignore "file already uploaded" errors instead of throwing ## [5.7.0] - 2018-07-26 ### Added - Added `lo ga4gh-genomicsets-create`. ## [5.5.0] - 2018-07-25 ### Added - Added option to use SSO when `lo auth` by specifying a custom auth client with `lo setup`. ## [5.4.0] - 2018-06-26 ### Added - Added `--reference` option to `ga4gh-variantset-create` and `ga4gh-readgroupset-create` commands. ## [5.3.0] - 2018-06-26 ### Added - Added `fhir-search-delete` command for bulk deleting. - Removed `fhir-delete-all` command. ## [5.2.1] - 2018-06-25 ### Added - Fixed issue with the `auth` action in the Linux executable. ## [5.2.0] - 2018-06-25 ### Added - Added executables to release artifacts. ## [5.1.0] - 2018-06-19 ### Added - Added `auth --set` command option to manually set the access token. ## [5.0.0] - 2018-05-22 ### Removed - Dataset commands ### Added - Project commands, which replace dataset commands ## 4.2.0 - 2018-04-26 ### Fixed - Use POST based searching for FHIR searches. ## 4.1.0 - 2018-04-05 ### Added - Optimized bulk/batch ingest for fhir-ingest ## 4.0.2 - 2018-03-30 ### Fixed - Better error message when using 'auth' command with client credentials ## 4.0.0 - 2018-03-23 ### Added - Public release ### Fixed - Better error message when using 'auth' command with client credentials ## 3.2.0 - 2018-03-21 ### Added - Commands for Attribute Based Access Control policies and groups. ## 3.1.0 - 2018-03-12 ### Added - Commands for task resources ## 2.5.1 - 2018-01-19 ### Fixed - The `lo fhir` `--limit` option will not set pageSize when requesting resources ## 2.5.0 - 2018-01-15 ### Added - Commands for FHIR resources ## 2.4.2 - 2018-01-12 ### Fixed - `lo auth -c` now produces an error message if a clip board utility isn't installed - `lo auth` no longer hangs for 1 minute ## 2.4.1 - 2018-01-04 ### Fixed - Changed `files-download` to work with new download response. ## 2.4.0 - 2018-01-04 ### Added - Added support for GA4GH RNA Quantification sets. ## 2.3.1 - 2018-01-03 ### Fixed - Throw a proper error when `setup` has not been performed. ## 2.3.0 - 2018-01-02 ### Changed - The `auth` command was changed to perform authentication using the web login view. ## 2.2.0 - 2017-12-21 ### Added - Commands for GA4GH resources ## 2.1.0 - 2017-12-21 ### Added - Support to specify client credential settings in the `setup` command - Ability to automatically refresh access tokens on expiration ## 2.0.0 - 2017-12-20 ### Added - Added a `--copy` option to the `auth` command to copy the access token to the clipboard ### Changed - Replaced the `defaults` command with a `setup` command [13.9.0]: https://github.com/lifeomic/cli/compare/v13.8.1..v13.9.0 [13.8.1]: https://github.com/lifeomic/cli/compare/v13.8.0..v13.8.1 [13.8.0]: https://github.com/lifeomic/cli/compare/v13.7.0..v13.8.0 [13.7.0]: https://github.com/lifeomic/cli/compare/v13.6.0..v13.7.0 [13.6.0]: https://github.com/lifeomic/cli/compare/v13.5.0..v13.6.0 [13.5.0]: https://github.com/lifeomic/cli/compare/v13.4.0..v13.5.0 [13.4.0]: https://github.com/lifeomic/cli/compare/v13.3.0..v13.4.0 [13.3.0]: https://github.com/lifeomic/cli/compare/v13.2.0..v13.3.0 [13.2.0]: https://github.com/lifeomic/cli/compare/v13.1.0..v13.2.0 [13.1.0]: 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