@jbrowse/plugin-wiggle/esm/WiggleRPC/executeClusterScoreMatrix.js

JBrowse 2 wiggle adapters, tracks, etc.

import { clusterObject, toNewick } from '@gmod/hclust';
import { checkStopToken2, createStopTokenChecker, } from '@jbrowse/core/util/stopToken';
import { getScoreMatrix } from "./getScoreMatrix.js";
export async function executeClusterScoreMatrix({ pluginManager, args, }) {
    const stopTokenCheck = createStopTokenChecker(args.stopToken);
    const matrix = await getScoreMatrix({
        pluginManager,
        args: {
            ...args,
            stopTokenCheck,
        },
    });
    const result = await clusterObject({
        data: matrix,
        onProgress: a => {
            args.statusCallback?.(a);
        },
        checkCancellation: () => {
            checkStopToken2(stopTokenCheck);
        },
    });
    return {
        order: result.order,
        tree: toNewick(result.tree),
    };
}