@jbrowse/plugin-wiggle/esm/WiggleRPC/WiggleGetMultiRegionQuantitativeStats.js

JBrowse 2 wiggle adapters, tracks, etc.

import { getAdapter } from '@jbrowse/core/data_adapters/dataAdapterCache';
import RpcMethodTypeWithFiltersAndRenameRegions from '@jbrowse/core/pluggableElementTypes/RpcMethodTypeWithFiltersAndRenameRegions';
import { renameRegionsIfNeeded } from '@jbrowse/core/util';
export class WiggleGetMultiRegionQuantitativeStats extends RpcMethodTypeWithFiltersAndRenameRegions {
    name = 'WiggleGetMultiRegionQuantitativeStats';
    async serializeArguments(args, rpcDriverClassName) {
        const pm = this.pluginManager;
        const assemblyManager = pm.rootModel?.session?.assemblyManager;
        if (!assemblyManager) {
            throw new Error('no assembly manager');
        }
        let renamedStaticBlocks = args.staticBlocks;
        if (args.staticBlocks?.length) {
            const renamed = await renameRegionsIfNeeded(assemblyManager, {
                ...args,
                regions: args.staticBlocks,
            });
            renamedStaticBlocks = renamed.regions;
        }
        const baseResult = await super.serializeArguments(args, rpcDriverClassName);
        return {
            ...baseResult,
            staticBlocks: renamedStaticBlocks,
        };
    }
    async execute(args, rpcDriverClassName) {
        const pm = this.pluginManager;
        const deserializedArgs = await this.deserializeArguments(args, rpcDriverClassName);
        const { regions, staticBlocks, adapterConfig, sessionId } = deserializedArgs;
        const { dataAdapter } = await getAdapter(pm, sessionId, adapterConfig);
        return dataAdapter.getMultiRegionQuantitativeStats(regions, {
            ...deserializedArgs,
            staticBlocks,
        });
    }
}