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@jbrowse/plugin-wiggle

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JBrowse 2 wiggle adapters, tracks, etc.

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import { createStopTokenChecker, groupBy, renderToAbstractCanvas, updateStatus, } from '@jbrowse/core/util'; import { rpcResult } from '@jbrowse/core/util/librpc'; import { collectTransferables } from '@jbrowse/core/util/offscreenCanvasPonyfill'; import { drawXY } from "../drawXY.js"; import { serializeWiggleFeature } from "../util.js"; export async function renderMultiRowXYPlot(renderProps, features) { const { sources, height, regions, bpPerPx, stopToken, statusCallback = () => { }, } = renderProps; const region = regions[0]; const width = (region.end - region.start) / bpPerPx; const rowHeight = height / sources.length; const lastCheck = createStopTokenChecker(stopToken); const { reducedFeatures, ...rest } = await updateStatus('Rendering plot', statusCallback, () => renderToAbstractCanvas(width, height, renderProps, ctx => { const groups = groupBy(features, f => f.get('source')); let allReducedFeatures = []; ctx.save(); for (const source of sources) { const { reducedFeatures: reduced } = drawXY(ctx, { ...renderProps, features: groups[source.name] || [], height: rowHeight, colorCallback: () => source.color || 'blue', lastCheck, }); allReducedFeatures = allReducedFeatures.concat(reduced); ctx.strokeStyle = 'rgba(200,200,200,0.8)'; ctx.beginPath(); ctx.moveTo(0, rowHeight); ctx.lineTo(width, rowHeight); ctx.stroke(); ctx.translate(0, rowHeight); } ctx.restore(); return { reducedFeatures: allReducedFeatures }; })); const serialized = { ...rest, features: reducedFeatures.map(serializeWiggleFeature), height, width, }; return rpcResult(serialized, collectTransferables(rest)); }