@jbrowse/plugin-wiggle
Version:
JBrowse 2 wiggle adapters, tracks, etc.
54 lines (53 loc) • 1.86 kB
JavaScript
import { ConfigurationSchema } from '@jbrowse/core/configuration';
import { baseLinearDisplayConfigSchema } from '@jbrowse/plugin-linear-genome-view';
import { types } from 'mobx-state-tree';
export default function sharedWiggleConfigFactory() {
return ConfigurationSchema('SharedWiggleDisplay', {
autoscale: {
type: 'stringEnum',
defaultValue: 'local',
model: types.enumeration('Autoscale type', [
'global',
'local',
'globalsd',
'localsd',
'zscore',
]),
description: 'global/local using their min/max values or w/ standard deviations (globalsd/localsd)',
},
minimalTicks: {
type: 'boolean',
defaultValue: false,
description: 'use the minimal amount of ticks',
},
minScore: {
type: 'number',
defaultValue: Number.MIN_VALUE,
description: 'minimum value for the y-scale',
},
maxScore: {
type: 'number',
description: 'maximum value for the y-scale',
defaultValue: Number.MAX_VALUE,
},
numStdDev: {
type: 'number',
description: 'number of standard deviations to use for autoscale types globalsd or localsd',
defaultValue: 3,
},
scaleType: {
type: 'stringEnum',
model: types.enumeration('Scale type', ['linear', 'log']),
description: 'The type of scale to use',
defaultValue: 'linear',
},
inverted: {
type: 'boolean',
description: 'draw upside down',
defaultValue: false,
},
}, {
baseConfiguration: baseLinearDisplayConfigSchema,
explicitlyTyped: true,
});
}