@jbrowse/plugin-wiggle

import type { Source } from '../util'; import type PluginManager from '@jbrowse/core/PluginManager'; import type { AnyConfigurationSchemaType } from '@jbrowse/core/configuration'; import type { AnyReactComponentType, Feature } from '@jbrowse/core/util'; import type { ExportSvgDisplayOptions } from '@jbrowse/plugin-linear-genome-view'; import type { Instance } from 'mobx-state-tree'; export declare function stateModelFactory(_pluginManager: PluginManager, configSchema: AnyConfigurationSchemaType): import("mobx-state-tree").IModelType<{ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>; type: import("mobx-state-tree").ISimpleType<string>; rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; } & { heightPreConfig: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>; } & { userBpPerPxLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>; userByteSizeLimit: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>; } & { blockState: import("mobx-state-tree").IMapType<import("mobx-state-tree").IModelType<{ key: import("mobx-state-tree").ISimpleType<string>; region: import("mobx-state-tree").IType<import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region, import("@jbrowse/core/util").Region>; reloadFlag: import("mobx-state-tree").IType<number | undefined, number, number>; isLeftEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>; isRightEndOfDisplayedRegion: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>; }, { stopToken: string | undefined; filled: boolean; reactElement: React.ReactElement | undefined; features: Map<string, Feature> | undefined; layout: any; status: string; error: unknown; message: string | undefined; maxHeightReached: boolean; ReactComponent: ({ model, }: { model: { error?: unknown; reload: () => void; message: React.ReactNode; filled?: boolean; status?: string; reactElement?: React.ReactElement; }; }) => import("react/jsx-runtime").JSX.Element | undefined; renderProps: any; } & { doReload(): void; afterAttach(): void; setStatus(message: string): void; setLoading(newStopToken: string): void; setMessage(messageText: string): void; setRendered(props: import("@jbrowse/plugin-linear-genome-view/src/BaseLinearDisplay/models/serverSideRenderedBlock").RenderedProps | undefined): void; setError(error: unknown): void; reload(): void; beforeDestroy(): void; }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; configuration: import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaType<{ maxFeatureScreenDensity: { type: string; description: string; defaultValue: number; }; fetchSizeLimit: { type: string; defaultValue: number; description: string; }; height: { type: string; defaultValue: number; description: string; }; mouseover: { type: string; description: string; defaultValue: string; contextVariable: string[]; }; jexlFilters: { type: string; description: string; defaultValue: never[]; }; }, import("@jbrowse/core/configuration/configurationSchema").ConfigurationSchemaOptions<undefined, "displayId">>; } & { selectedRendering: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>; resolution: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<number>, [undefined]>; fill: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>; minSize: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>; color: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; posColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; negColor: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; summaryScoreMode: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; rendererTypeNameState: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; scale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; autoscale: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; displayCrossHatches: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<boolean>>; constraints: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IModelType<{ max: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>; min: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<number>>; }, {}, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>, [undefined]>; configuration: AnyConfigurationSchemaType; } & { type: import("mobx-state-tree").ISimpleType<"MultiLinearWiggleDisplay">; layout: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").IType<Source[], Source[], Source[]>, [undefined]>; showSidebar: import("mobx-state-tree").IType<boolean | undefined, boolean, boolean>; }, { rendererTypeName: string; error: unknown; message: string | undefined; } & { readonly RenderingComponent: React.FC<{ model: { id: string; type: string; rpcDriverName: string | undefined; } & import("mobx-state-tree/dist/internal").NonEmptyObject & { rendererTypeName: string; error: unknown; message: string | undefined; } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>; type: import("mobx-state-tree").ISimpleType<string>; rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; }, { rendererTypeName: string; error: unknown; message: string | undefined; }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; onHorizontalScroll?: () => void; blockState?: Record<string, any>; }>; readonly DisplayBlurb: React.FC<{ model: { id: string; type: string; rpcDriverName: string | undefined; } & import("mobx-state-tree/dist/internal").NonEmptyObject & { rendererTypeName: string; error: unknown; message: string | undefined; } & import("mobx-state-tree").IStateTreeNode<import("mobx-state-tree").IModelType<{ id: import("mobx-state-tree").IOptionalIType<import("mobx-state-tree").ISimpleType<string>, [undefined]>; type: import("mobx-state-tree").ISimpleType<string>; rpcDriverName: import("mobx-state-tree").IMaybe<import("mobx-state-tree").ISimpleType<string>>; }, { rendererTypeName: string; error: unknown; message: string | undefined; }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>>; }> | null; readonly adapterConfig: any; readonly parentTrack: any; renderProps(): any; readonly rendererType: import("@jbrowse/core/pluggableElementTypes").RendererType; readonly DisplayMessageComponent: undefined | React.FC<any>; trackMenuItems(): import("@jbrowse/core/ui").MenuItem[]; readonly viewMenuActions: import("@jbrowse/core/ui").MenuItem[]; regionCannotBeRendered(): null; } & { setMessage(arg?: string): void; setError(error?: unknown): void; setRpcDriverName(rpcDriverName: string): void; reload(): void; } & { scrollTop: number; } & { readonly height: number; } & { setScrollTop(scrollTop: number): void; setHeight(displayHeight: number): number; resizeHeight(distance: number): number; } & { featureDensityStatsP: undefined | Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>; featureDensityStats: undefined | import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats; currStatsBpPerPx: number; } & { readonly currentBytesRequested: number; readonly currentFeatureScreenDensity: number; readonly maxFeatureScreenDensity: any; readonly featureDensityStatsReady: boolean; readonly maxAllowableBytes: number; } & { afterAttach(): void; } & { setCurrStatsBpPerPx(n: number): void; setFeatureDensityStatsLimit(stats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void; getFeatureDensityStats(): Promise<import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats>; setFeatureDensityStatsP(arg: any): void; setFeatureDensityStats(featureDensityStats?: import("@jbrowse/core/data_adapters/BaseAdapter").FeatureDensityStats): void; clearFeatureDensityStats(): void; } & { readonly regionTooLarge: boolean; readonly regionTooLargeReason: string; } & { readonly statsReadyAndRegionNotTooLarge: boolean; regionCannotBeRenderedText(_region: import("@jbrowse/core/util").Region): "" | "Force load to see features"; regionCannotBeRendered(_region: import("@jbrowse/core/util").Region): import("react/jsx-runtime").JSX.Element | null; } & { featureIdUnderMouse: undefined | string; contextMenuFeature: undefined | Feature; } & { readonly DisplayMessageComponent: undefined | React.FC<any>; readonly blockType: "staticBlocks" | "dynamicBlocks"; readonly blockDefinitions: import("@jbrowse/core/util/blockTypes").BlockSet; } & { readonly renderDelay: number; readonly TooltipComponent: AnyReactComponentType; readonly selectedFeatureId: string | undefined; copyInfoToClipboard(feature: Feature): void; } & { readonly features: import("@jbrowse/core/util/compositeMap").default<string, Feature>; readonly featureUnderMouse: Feature | undefined; getFeatureOverlapping(blockKey: string, x: number, y: number): string | undefined; getFeatureByID(blockKey: string, id: string): [number, number, number, number] | undefined; searchFeatureByID(id: string): [number, number, number, number] | undefined; } & { addBlock(key: string, block: import("@jbrowse/core/util/blockTypes").BaseBlock): void; deleteBlock(key: string): void; selectFeature(feature: Feature): void; navToFeature(feature: Feature): void; clearFeatureSelection(): void; setFeatureIdUnderMouse(feature?: string): void; setContextMenuFeature(feature?: Feature): void; } & { reload(): Promise<void>; } & { trackMenuItems(): import("@jbrowse/core/ui").MenuItem[]; contextMenuItems(): import("@jbrowse/core/ui").MenuItem[]; renderProps(): any; } & { renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>; afterAttach(): void; } & { message: undefined | string; stats: { currStatsBpPerPx: number; scoreMin: number; scoreMax: number; } | undefined; statsFetchInProgress: undefined | string; } & { updateQuantitativeStats(stats: { currStatsBpPerPx: number; scoreMin: number; scoreMax: number; }): void; setColor(color?: string): void; setPosColor(color?: string): void; setNegColor(color?: string): void; setStatsLoading(arg?: string): void; selectFeature(feature: Feature): void; setResolution(res: number): void; setFill(fill: number): void; toggleLogScale(): void; setScaleType(scale?: string): void; setSummaryScoreMode(val: string): void; setAutoscale(val: string): void; setMaxScore(val?: number): void; setRendererType(val: string): void; setMinScore(val?: number): void; toggleCrossHatches(): void; setCrossHatches(cross: boolean): void; } & { readonly adapterTypeName: any; readonly rendererTypeNameSimple: string; readonly filters: undefined; readonly scaleType: string; readonly maxScore: number; readonly minScore: number; } & { readonly adapterCapabilities: string[]; readonly rendererConfig: { [x: string]: any; } & import("mobx-state-tree/dist/internal").NonEmptyObject & { setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({ [x: string]: any; } & import("mobx-state-tree/dist/internal").NonEmptyObject & { setSubschema(slotName: string, data: Record<string, unknown>): Record<string, unknown> | ({ [x: string]: any; } & import("mobx-state-tree/dist/internal").NonEmptyObject & any & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>); } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>); } & import("mobx-state-tree").IStateTreeNode<AnyConfigurationSchemaType>; readonly autoscaleType: string; } & { readonly domain: number[] | undefined; } & { readonly filled: boolean; readonly summaryScoreModeSetting: string; readonly scaleOpts: { domain: number[] | undefined; stats: { currStatsBpPerPx: number; scoreMin: number; scoreMax: number; } | undefined; autoscaleType: string; scaleType: string; inverted: boolean; }; readonly canHaveFill: boolean; readonly displayCrossHatchesSetting: boolean; readonly hasResolution: boolean; readonly hasGlobalStats: boolean; } & { scoreTrackMenuItems(): ({ label: string; subMenu: { label: string; onClick: () => void; }[]; onClick?: undefined; } | { label: string; subMenu: { label: string; type: string; checked: boolean; onClick: () => void; }[]; onClick?: undefined; } | { label: string; onClick: () => void; subMenu?: undefined; })[]; } & { reload(): Promise<void>; } & { sourcesLoadingStopToken: string | undefined; featureUnderMouseVolatile: Feature | undefined; sourcesVolatile: Source[] | undefined; } & { setShowSidebar(arg: boolean): void; setSourcesLoading(str: string): void; setLayout(layout: Source[]): void; clearLayout(): void; setSources(sources: Source[]): void; setFeatureUnderMouse(f?: Feature): void; } & { readonly featureUnderMouse: Feature | undefined; readonly TooltipComponent: AnyReactComponentType; readonly rendererTypeName: string; } & { readonly graphType: boolean; readonly needsFullHeightScalebar: boolean; readonly isMultiRow: boolean; readonly needsCustomLegend: boolean; readonly canHaveFill: boolean; readonly renderColorBoxes: boolean; readonly prefersOffset: boolean; readonly sourcesWithoutLayout: { color: string; baseUri?: string; name: string; group?: string; }[] | undefined; readonly sources: { color: string; baseUri?: string; name: string; group?: string; }[] | undefined; readonly quantitativeStatsReady: boolean; } & { readonly rowHeight: number; readonly rowHeightTooSmallForScalebar: boolean; readonly useMinimalTicks: boolean; } & { adapterProps(): any; readonly ticks: { range: number[]; values: number[]; format: (d: import("d3-scale").NumberValue) => string; position: import("d3-scale").ScaleLinear<number, number, never> | import("d3-scale").ScaleQuantize<number, never>; } | undefined; readonly colors: string[]; readonly quantitativeStatsRelevantToCurrentZoom: boolean; } & { readonly legendFontSize: number; readonly canDisplayLegendLabels: boolean; readonly labelWidth: number; renderProps(): any; readonly hasResolution: boolean; readonly hasGlobalStats: boolean; readonly fillSetting: 2 | 1 | 0; } & { trackMenuItems(): (import("@jbrowse/core/ui").MenuDivider | import("@jbrowse/core/ui").MenuSubHeader | import("@jbrowse/core/ui").NormalMenuItem | import("@jbrowse/core/ui").CheckboxMenuItem | import("@jbrowse/core/ui").RadioMenuItem | import("@jbrowse/core/ui").SubMenuItem | { label: string; subMenu: ({ label: string; subMenu: { label: string; onClick: () => void; }[]; onClick?: undefined; } | { label: string; subMenu: { label: string; type: string; checked: boolean; onClick: () => void; }[]; onClick?: undefined; } | { label: string; onClick: () => void; subMenu?: undefined; })[]; type?: undefined; checked?: undefined; onClick?: undefined; } | { label: string; subMenu: { label: string; type: string; checked: boolean; onClick: () => void; }[]; type?: undefined; checked?: undefined; onClick?: undefined; } | { type: string; label: string; checked: boolean; onClick: () => void; subMenu?: undefined; })[]; } & { afterAttach(): void; renderSvg(opts: ExportSvgDisplayOptions): Promise<import("react/jsx-runtime").JSX.Element>; }, import("mobx-state-tree")._NotCustomized, import("mobx-state-tree")._NotCustomized>; export type WiggleDisplayStateModel = ReturnType<typeof stateModelFactory>; export type WiggleDisplayModel = Instance<WiggleDisplayStateModel>; export default stateModelFactory;