@jbrowse/plugin-wiggle
Version:
JBrowse 2 wiggle adapters, tracks, etc.
96 lines (95 loc) • 3.89 kB
JavaScript
;
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Object.defineProperty(o, k2, desc);
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if (k2 === undefined) k2 = k;
o[k2] = m[k];
}));
var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
Object.defineProperty(o, "default", { enumerable: true, value: v });
}) : function(o, v) {
o["default"] = v;
});
var __importStar = (this && this.__importStar) || (function () {
var ownKeys = function(o) {
ownKeys = Object.getOwnPropertyNames || function (o) {
var ar = [];
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return function (mod) {
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if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
__setModuleDefault(result, mod);
return result;
};
})();
Object.defineProperty(exports, "__esModule", { value: true });
exports.default = CreateMultiWiggleExtensionF;
const react_1 = require("react");
const configuration_1 = require("@jbrowse/core/configuration");
const util_1 = require("@jbrowse/core/util");
const ConfirmDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./ConfirmDialog'))));
function makeTrack({ model, arg, }) {
const tracks = model.selection;
const trackIds = tracks.map(c => (0, configuration_1.readConfObject)(c, 'name'));
const subadapters = tracks
.map(c => (0, configuration_1.readConfObject)(c, 'adapter'))
.map((c, idx) => ({ ...c, source: trackIds[idx] }));
const now = +Date.now();
const trackId = `multitrack-${now}-sessionTrack`;
const session = (0, util_1.getSession)(model);
if ((0, util_1.isSessionWithAddTracks)(session)) {
session.addTrackConf({
type: 'MultiQuantitativeTrack',
trackId,
name: arg.name,
assemblyNames: [
...new Set(tracks.flatMap(c => (0, configuration_1.readConfObject)(c, 'assemblyNames'))),
],
adapter: {
type: 'MultiWiggleAdapter',
subadapters,
},
});
model.view.showTrack(trackId);
}
}
function CreateMultiWiggleExtensionF(pm) {
pm.addToExtensionPoint('TrackSelector-multiTrackMenuItems', (items, props) => {
const { session } = props;
return [
...items,
...((0, util_1.isSessionWithAddTracks)(session)
? [
{
label: 'Create multi-wiggle track',
onClick: (model) => {
const tracks = model.selection;
(0, util_1.getSession)(model).queueDialog(handleClose => [
ConfirmDialog,
{
tracks,
onClose: (arg, arg1) => {
if (arg && arg1) {
makeTrack({ model, arg: arg1 });
}
handleClose();
},
},
]);
},
},
]
: []),
];
});
}