@jbrowse/plugin-linear-genome-view/esm/index.js

JBrowse 2 linear genome view

import Plugin from '@jbrowse/core/Plugin';
import { ConfigurationSchema } from '@jbrowse/core/configuration';
import { isAbstractMenuManager } from '@jbrowse/core/util';
import { types } from '@jbrowse/mobx-state-tree';
import LineStyleIcon from '@mui/icons-material/LineStyle';
import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, } from "./BaseLinearDisplay/index.js";
import BasicTrackF from "./BasicTrack/index.js";
import FeatureTrackF from "./FeatureTrack/index.js";
import LaunchLinearGenomeViewF from "./LaunchLinearGenomeView/index.js";
import LinearBareDisplayF from "./LinearBareDisplay/index.js";
import LinearBasicDisplayF from "./LinearBasicDisplay/index.js";
import ZoomControls from "./LinearGenomeView/components/HeaderZoomControls.js";
import LinearGenomeViewF, { LinearGenomeView, SearchBox, } from "./LinearGenomeView/index.js";
export default class LinearGenomeViewPlugin extends Plugin {
    name = 'LinearGenomeViewPlugin';
    exports = {
        BaseLinearDisplayComponent,
        BaseLinearDisplay,
        baseLinearDisplayConfigSchema,
        SearchBox,
        ZoomControls,
        LinearGenomeView,
    };
    configurationSchema = ConfigurationSchema('LinearGenomeViewConfigSchema', {
        trackLabels: {
            type: 'string',
            defaultValue: 'overlapping',
            model: types.enumeration('trackLabelOptions', [
                'offset',
                'overlapping',
                'hidden',
            ]),
        },
    });
    install(pluginManager) {
        FeatureTrackF(pluginManager);
        BasicTrackF(pluginManager);
        LinearBasicDisplayF(pluginManager);
        LinearGenomeViewF(pluginManager);
        LinearBareDisplayF(pluginManager);
        LaunchLinearGenomeViewF(pluginManager);
    }
    configure(pluginManager) {
        if (isAbstractMenuManager(pluginManager.rootModel)) {
            pluginManager.rootModel.appendToSubMenu(['Add'], {
                label: 'Linear genome view',
                icon: LineStyleIcon,
                onClick: (session) => {
                    session.addView('LinearGenomeView', {});
                },
            });
        }
    }
}
export { configSchemaFactory as linearBareDisplayConfigSchemaFactory, stateModelFactory as linearBareDisplayStateModelFactory, } from "./LinearBareDisplay/index.js";
export { BaseLinearDisplay, BaseLinearDisplayComponent, BlockMsg, FeatureDensityMixin, FloatingLegend, NonBlockCanvasDisplayComponent, NonBlockCanvasDisplayMixin, SVGLegend, TooLargeMessage, TrackHeightMixin, baseLinearDisplayConfigSchema, calculateSvgLegendWidth, createSubfeatureLabelMetadata, drawCanvasImageData, } from "./BaseLinearDisplay/index.js";
export { HighlightBand, RefNameAutocomplete, SearchBox, } from "./LinearGenomeView/index.js";
export { fetchResults } from "./searchUtils.js";
export { SVGGridlines, SVGRuler, SVGTracks, renderToSvg, } from "./LinearGenomeView/svgcomponents/SVGLinearGenomeView.js";
export { totalHeight } from "./LinearGenomeView/svgcomponents/util.js";
export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from "./LinearBasicDisplay/index.js";
export { configSchema as linearFeatureDisplayConfigSchemaFactory, modelFactory as linearFeatureDisplayModelFactory, } from "./LinearFeatureDisplay/index.js";
export { default as LinearBasicDisplayComponent } from "./LinearBasicDisplay/components/LinearBasicDisplayComponent.js";