@jbrowse/plugin-linear-genome-view/esm/index.js

JBrowse 2 linear genome view

import Plugin from '@jbrowse/core/Plugin';
import { ConfigurationSchema } from '@jbrowse/core/configuration';
import { isAbstractMenuManager } from '@jbrowse/core/util';
import LineStyleIcon from '@mui/icons-material/LineStyle';
import { types } from 'mobx-state-tree';
import { BaseLinearDisplay, BaseLinearDisplayComponent, baseLinearDisplayConfigSchema, } from './BaseLinearDisplay';
import BasicTrackF from './BasicTrack';
import FeatureTrackF from './FeatureTrack';
import LaunchLinearGenomeViewF from './LaunchLinearGenomeView';
import LinearBareDisplayF from './LinearBareDisplay';
import LinearBasicDisplayF from './LinearBasicDisplay';
import LinearGenomeViewF, { LinearGenomeView, SearchBox, } from './LinearGenomeView';
import ZoomControls from './LinearGenomeView/components/HeaderZoomControls';
export default class LinearGenomeViewPlugin extends Plugin {
    constructor() {
        super(...arguments);
        this.name = 'LinearGenomeViewPlugin';
        this.exports = {
            BaseLinearDisplayComponent,
            BaseLinearDisplay,
            baseLinearDisplayConfigSchema,
            SearchBox,
            ZoomControls,
            LinearGenomeView,
        };
        this.configurationSchema = ConfigurationSchema('LinearGenomeViewConfigSchema', {
            trackLabels: {
                type: 'string',
                defaultValue: 'overlapping',
                model: types.enumeration('trackLabelOptions', [
                    'offset',
                    'overlapping',
                    'hidden',
                ]),
            },
        });
    }
    install(pluginManager) {
        FeatureTrackF(pluginManager);
        BasicTrackF(pluginManager);
        LinearBasicDisplayF(pluginManager);
        LinearGenomeViewF(pluginManager);
        LinearBareDisplayF(pluginManager);
        LaunchLinearGenomeViewF(pluginManager);
    }
    configure(pluginManager) {
        if (isAbstractMenuManager(pluginManager.rootModel)) {
            pluginManager.rootModel.appendToSubMenu(['Add'], {
                label: 'Linear genome view',
                icon: LineStyleIcon,
                onClick: (session) => {
                    session.addView('LinearGenomeView', {});
                },
            });
        }
    }
}
export { configSchemaFactory as linearBareDisplayConfigSchemaFactory, stateModelFactory as linearBareDisplayStateModelFactory, } from './LinearBareDisplay';
export { BaseLinearDisplay, BaseLinearDisplayComponent, BlockMsg, FeatureDensityMixin, TooLargeMessage, TrackHeightMixin, baseLinearDisplayConfigSchema, } from './BaseLinearDisplay';
export { RefNameAutocomplete, SearchBox, } from './LinearGenomeView';
export { SVGRuler, SVGTracks, renderToSvg, } from './LinearGenomeView/svgcomponents/SVGLinearGenomeView';
export { totalHeight } from './LinearGenomeView/svgcomponents/util';
export { configSchema as linearBasicDisplayConfigSchemaFactory, modelFactory as linearBasicDisplayModelFactory, } from './LinearBasicDisplay';