@jbrowse/core/esm/rpc/methods/CoreGetSequence.js

JBrowse 2 core libraries used by plugins

import { getAdapter } from "../../data_adapters/dataAdapterCache.js";
import RpcMethodType from "../../pluggableElementTypes/RpcMethodType.js";
import { renameRegionsIfNeeded } from "../../util/index.js";
export default class CoreGetSequence extends RpcMethodType {
    name = 'CoreGetSequence';
    async serializeArguments(args, rpcDriver) {
        const { rootModel } = this.pluginManager;
        const assemblyManager = rootModel.session.assemblyManager;
        const renamedArgs = await renameRegionsIfNeeded(assemblyManager, args);
        return super.serializeArguments(renamedArgs, rpcDriver);
    }
    async execute(args, rpcDriver) {
        const { stopToken, sessionId, adapterConfig, region } = await this.deserializeArguments(args, rpcDriver);
        const dataAdapter = (await getAdapter(this.pluginManager, sessionId, adapterConfig)).dataAdapter;
        return dataAdapter.getSequence(region, { stopToken });
    }
}