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@jbrowse/core

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JBrowse 2 core libraries used by plugins

jbrowse.org

GMOD/jbrowse-components

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import type { SimpleFeatureSerialized } from '../../util/index.ts'; import type { Instance } from '@jbrowse/mobx-state-tree'; type ShowCoordinatesMode = 'none' | 'relative' | 'genomic'; type SequenceDisplayMode = '' | 'gene' | 'gene_collapsed_intron' | 'gene_updownstream' | 'cdna' | 'cds' | 'genomic' | 'genomic_sequence_updownstream' | 'protein'; export declare function SequenceFeatureDetailsF(): import("@jbrowse/mobx-state-tree").IModelType<{}, { showCoordinatesSetting: string; intronBp: number; upDownBp: number; upperCaseCDS: boolean; charactersPerRow: number; feature: SimpleFeatureSerialized | undefined; mode: SequenceDisplayMode; } & { setFeature(f: SimpleFeatureSerialized): void; setUpDownBp(f: number): void; setIntronBp(f: number): void; setUpperCaseCDS(f: boolean): void; setShowCoordinates(f: ShowCoordinatesMode): void; setMode(mode: SequenceDisplayMode): void; } & { readonly showCoordinates: boolean; readonly showGenomicCoordsOption: boolean; readonly hasCDS: boolean | undefined; readonly hasExon: boolean | undefined; readonly hasExonOrCDS: boolean | undefined; } & { afterCreate(): void; }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>; export declare function createSequenceFeatureDetailsModel(): {} & import("@jbrowse/mobx-state-tree/dist/internal").NonEmptyObject & { showCoordinatesSetting: string; intronBp: number; upDownBp: number; upperCaseCDS: boolean; charactersPerRow: number; feature: SimpleFeatureSerialized | undefined; mode: SequenceDisplayMode; } & { setFeature(f: SimpleFeatureSerialized): void; setUpDownBp(f: number): void; setIntronBp(f: number): void; setUpperCaseCDS(f: boolean): void; setShowCoordinates(f: ShowCoordinatesMode): void; setMode(mode: SequenceDisplayMode): void; } & { readonly showCoordinates: boolean; readonly showGenomicCoordsOption: boolean; readonly hasCDS: boolean | undefined; readonly hasExon: boolean | undefined; readonly hasExonOrCDS: boolean | undefined; } & { afterCreate(): void; } & import("@jbrowse/mobx-state-tree").IStateTreeNode<import("@jbrowse/mobx-state-tree").IModelType<{}, { showCoordinatesSetting: string; intronBp: number; upDownBp: number; upperCaseCDS: boolean; charactersPerRow: number; feature: SimpleFeatureSerialized | undefined; mode: SequenceDisplayMode; } & { setFeature(f: SimpleFeatureSerialized): void; setUpDownBp(f: number): void; setIntronBp(f: number): void; setUpperCaseCDS(f: boolean): void; setShowCoordinates(f: ShowCoordinatesMode): void; setMode(mode: SequenceDisplayMode): void; } & { readonly showCoordinates: boolean; readonly showGenomicCoordsOption: boolean; readonly hasCDS: boolean | undefined; readonly hasExon: boolean | undefined; readonly hasExonOrCDS: boolean | undefined; } & { afterCreate(): void; }, import("@jbrowse/mobx-state-tree")._NotCustomized, import("@jbrowse/mobx-state-tree")._NotCustomized>>; export declare function destroySequenceFeatureDetailsModel(model: SequenceFeatureDetailsModel): void; export type SequenceFeatureDetailsStateModel = ReturnType<typeof SequenceFeatureDetailsF>; export type SequenceFeatureDetailsModel = Instance<SequenceFeatureDetailsStateModel>; export {};