@jbrowse/core
Version:
JBrowse 2 core libraries used by plugins
1,086 lines • 51.9 kB
JavaScript
"use strict";
Object.defineProperty(exports, "__esModule", { value: true });
exports.default = {
source: 'BestRefSeq',
type: 'gene',
start: 36023399,
end: 36032380,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
id: 'gene634',
dbxref: ['GeneID:23154', 'HGNC:HGNC:17597', 'MIM:608458'],
name: 'NCDN',
description: 'neurochondrin',
gbkey: 'Gene',
gene: 'NCDN',
gene_biotype: 'protein_coding',
subfeatures: [
{
source: 'BestRefSeq',
type: 'mRNA',
start: 36023399,
end: 36032380,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
id: 'mRNA1331',
parent: 'gene634',
dbxref: [
'GeneID:23154',
'Genbank:NM_014284.3',
'HGNC:HGNC:17597',
'MIM:608458',
],
name: 'NM_014284.3',
gbkey: 'mRNA',
gene: 'NCDN',
product: 'neurochondrin, transcript variant 3',
tag: 'RefSeq Select',
transcript_id: 'NM_014284.3',
subfeatures: [
{
source: 'BestRefSeq',
type: 'exon',
start: 36023399,
end: 36023824,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
parent: 'mRNA1331',
dbxref: [
'GeneID:23154',
'Genbank:NM_014284.3',
'HGNC:HGNC:17597',
'MIM:608458',
],
gbkey: 'mRNA',
gene: 'NCDN',
product: 'neurochondrin, transcript variant 3',
tag: 'RefSeq Select',
transcript_id: 'NM_014284.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-0',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
start: 36023791,
end: 36023824,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
id: 'CDS1286',
parent: 'mRNA1331',
dbxref: [
'CCDS:CCDS392.1',
'GeneID:23154',
'Genbank:NP_055099.1',
'HGNC:HGNC:17597',
'MIM:608458',
],
name: 'NP_055099.1',
note: 'isoform 1 is encoded by transcript variant 3',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 1',
protein_id: 'NP_055099.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-1',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
start: 36024707,
end: 36024848,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
id: 'CDS1286',
parent: 'mRNA1331',
dbxref: [
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'GeneID:23154',
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'MIM:608458',
],
name: 'NP_055099.1',
note: 'isoform 1 is encoded by transcript variant 3',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 1',
protein_id: 'NP_055099.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-2',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
start: 36025926,
end: 36026895,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
id: 'CDS1286',
parent: 'mRNA1331',
dbxref: [
'CCDS:CCDS392.1',
'GeneID:23154',
'Genbank:NP_055099.1',
'HGNC:HGNC:17597',
'MIM:608458',
],
name: 'NP_055099.1',
note: 'isoform 1 is encoded by transcript variant 3',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 1',
protein_id: 'NP_055099.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-3',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
start: 36027992,
end: 36028234,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
id: 'CDS1286',
parent: 'mRNA1331',
dbxref: [
'CCDS:CCDS392.1',
'GeneID:23154',
'Genbank:NP_055099.1',
'HGNC:HGNC:17597',
'MIM:608458',
],
name: 'NP_055099.1',
note: 'isoform 1 is encoded by transcript variant 3',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 1',
protein_id: 'NP_055099.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-4',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
start: 36028802,
end: 36029027,
strand: 1,
phase: 1,
refName: 'NC_000001.10',
id: 'CDS1286',
parent: 'mRNA1331',
dbxref: [
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'GeneID:23154',
'Genbank:NP_055099.1',
'HGNC:HGNC:17597',
'MIM:608458',
],
name: 'NP_055099.1',
note: 'isoform 1 is encoded by transcript variant 3',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 1',
protein_id: 'NP_055099.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-5',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
start: 36029367,
end: 36029510,
strand: 1,
phase: 1,
refName: 'NC_000001.10',
id: 'CDS1286',
parent: 'mRNA1331',
dbxref: [
'CCDS:CCDS392.1',
'GeneID:23154',
'Genbank:NP_055099.1',
'HGNC:HGNC:17597',
'MIM:608458',
],
name: 'NP_055099.1',
note: 'isoform 1 is encoded by transcript variant 3',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 1',
protein_id: 'NP_055099.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-6',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
start: 36030827,
end: 36031264,
strand: 1,
phase: 2,
refName: 'NC_000001.10',
id: 'CDS1286',
parent: 'mRNA1331',
dbxref: [
'CCDS:CCDS392.1',
'GeneID:23154',
'Genbank:NP_055099.1',
'HGNC:HGNC:17597',
'MIM:608458',
],
name: 'NP_055099.1',
note: 'isoform 1 is encoded by transcript variant 3',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 1',
protein_id: 'NP_055099.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-7',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'exon',
start: 36024707,
end: 36024848,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
parent: 'mRNA1331',
dbxref: [
'GeneID:23154',
'Genbank:NM_014284.3',
'HGNC:HGNC:17597',
'MIM:608458',
],
gbkey: 'mRNA',
gene: 'NCDN',
product: 'neurochondrin, transcript variant 3',
tag: 'RefSeq Select',
transcript_id: 'NM_014284.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-8',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'exon',
start: 36025926,
end: 36026895,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
parent: 'mRNA1331',
dbxref: [
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'Genbank:NM_014284.3',
'HGNC:HGNC:17597',
'MIM:608458',
],
gbkey: 'mRNA',
gene: 'NCDN',
product: 'neurochondrin, transcript variant 3',
tag: 'RefSeq Select',
transcript_id: 'NM_014284.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-9',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'exon',
start: 36027992,
end: 36028234,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
parent: 'mRNA1331',
dbxref: [
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'Genbank:NM_014284.3',
'HGNC:HGNC:17597',
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],
gbkey: 'mRNA',
gene: 'NCDN',
product: 'neurochondrin, transcript variant 3',
tag: 'RefSeq Select',
transcript_id: 'NM_014284.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-10',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'exon',
start: 36028802,
end: 36029027,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
parent: 'mRNA1331',
dbxref: [
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],
gbkey: 'mRNA',
gene: 'NCDN',
product: 'neurochondrin, transcript variant 3',
tag: 'RefSeq Select',
transcript_id: 'NM_014284.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-11',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'exon',
start: 36029367,
end: 36029510,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
parent: 'mRNA1331',
dbxref: [
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],
gbkey: 'mRNA',
gene: 'NCDN',
product: 'neurochondrin, transcript variant 3',
tag: 'RefSeq Select',
transcript_id: 'NM_014284.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-12',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
{
source: 'BestRefSeq',
type: 'exon',
start: 36030827,
end: 36032380,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
parent: 'mRNA1331',
dbxref: [
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],
gbkey: 'mRNA',
gene: 'NCDN',
product: 'neurochondrin, transcript variant 3',
tag: 'RefSeq Select',
transcript_id: 'NM_014284.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0-13',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
},
],
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-0',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638',
},
{
source: 'BestRefSeq',
type: 'mRNA',
start: 36023399,
end: 36032380,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
id: 'mRNA1333',
parent: 'gene634',
dbxref: [
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'HGNC:HGNC:17597',
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],
name: 'NM_001014841.2',
gbkey: 'mRNA',
gene: 'NCDN',
product: 'neurochondrin, transcript variant 2',
transcript_id: 'NM_001014841.2',
subfeatures: [
{
source: 'BestRefSeq',
type: 'exon',
start: 36023399,
end: 36023484,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
parent: 'mRNA1333',
dbxref: [
'GeneID:23154',
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],
gbkey: 'mRNA',
gene: 'NCDN',
product: 'neurochondrin, transcript variant 2',
transcript_id: 'NM_001014841.2',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1-0',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1',
},
{
source: 'BestRefSeq',
type: 'exon',
start: 36024707,
end: 36024848,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
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dbxref: [
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],
gbkey: 'mRNA',
gene: 'NCDN',
product: 'neurochondrin, transcript variant 2',
transcript_id: 'NM_001014841.2',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1-1',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1',
},
{
source: 'BestRefSeq',
type: 'CDS',
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end: 36024848,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
id: 'CDS1288',
parent: 'mRNA1333',
dbxref: [
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'GeneID:23154',
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'MIM:608458',
],
name: 'NP_001014841.1',
note: 'isoform 2 is encoded by transcript variant 2',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 2',
protein_id: 'NP_001014841.1',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1-2',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1',
},
{
source: 'BestRefSeq',
type: 'CDS',
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end: 36026895,
strand: 1,
phase: 0,
refName: 'NC_000001.10',
id: 'CDS1288',
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dbxref: [
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],
name: 'NP_001014841.1',
note: 'isoform 2 is encoded by transcript variant 2',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 2',
protein_id: 'NP_001014841.1',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1-3',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1',
},
{
source: 'BestRefSeq',
type: 'CDS',
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strand: 1,
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refName: 'NC_000001.10',
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],
name: 'NP_001014841.1',
note: 'isoform 2 is encoded by transcript variant 2',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 2',
protein_id: 'NP_001014841.1',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1-4',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1',
},
{
source: 'BestRefSeq',
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strand: 1,
phase: 1,
refName: 'NC_000001.10',
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],
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note: 'isoform 2 is encoded by transcript variant 2',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 2',
protein_id: 'NP_001014841.1',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1-5',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1',
},
{
source: 'BestRefSeq',
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strand: 1,
phase: 1,
refName: 'NC_000001.10',
id: 'CDS1288',
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],
name: 'NP_001014841.1',
note: 'isoform 2 is encoded by transcript variant 2',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 2',
protein_id: 'NP_001014841.1',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1-6',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1',
},
{
source: 'BestRefSeq',
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strand: 1,
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],
name: 'NP_001014841.1',
note: 'isoform 2 is encoded by transcript variant 2',
gbkey: 'CDS',
gene: 'NCDN',
product: 'neurochondrin isoform 2',
protein_id: 'NP_001014841.1',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1-7',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-164287638-1',
},
{
source: 'BestRefSeq',
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],
gbkey: 'mRNA',
gene: 'NCDN',
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