@jbrowse/core
Version:
JBrowse 2 core libraries used by plugins
586 lines (585 loc) • 26.9 kB
JavaScript
"use strict";
Object.defineProperty(exports, "__esModule", { value: true });
exports.default = {
source: 'BestRefSeq',
type: 'gene',
start: 35331036,
end: 35395251,
strand: -1,
phase: 0,
refName: 'NC_000001.10',
id: 'gene625',
dbxref: ['GeneID:58512', 'HGNC:HGNC:30368', 'MIM:611413'],
name: 'DLGAP3',
description: 'DLG associated protein 3',
gbkey: 'Gene',
gene: 'DLGAP3',
gene_biotype: 'protein_coding',
gene_synonym: ['DAP3', 'SAPAP3'],
subfeatures: [
{
source: 'BestRefSeq',
type: 'mRNA',
start: 35331036,
end: 35395251,
strand: -1,
phase: 0,
refName: 'NC_000001.10',
id: 'mRNA1315',
parent: 'gene625',
dbxref: [
'GeneID:58512',
'Genbank:NM_001080418.3',
'HGNC:HGNC:30368',
'MIM:611413',
],
name: 'NM_001080418.3',
gbkey: 'mRNA',
gene: 'DLGAP3',
product: 'DLG associated protein 3',
tag: 'RefSeq Select',
transcript_id: 'NM_001080418.3',
subfeatures: [
{
source: 'BestRefSeq',
type: 'exon',
start: 35331036,
end: 35331902,
strand: -1,
phase: 0,
refName: 'NC_000001.10',
parent: 'mRNA1315',
dbxref: [
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'HGNC:HGNC:30368',
'MIM:611413',
],
gbkey: 'mRNA',
gene: 'DLGAP3',
product: 'DLG associated protein 3',
tag: 'RefSeq Select',
transcript_id: 'NM_001080418.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-0',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
start: 35331683,
end: 35331902,
strand: -1,
phase: 0,
refName: 'NC_000001.10',
id: 'CDS1270',
parent: 'mRNA1315',
dbxref: [
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],
name: 'NP_001073887.1',
gbkey: 'CDS',
gene: 'DLGAP3',
product: 'disks large-associated protein 3',
protein_id: 'NP_001073887.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-1',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
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strand: -1,
phase: 0,
refName: 'NC_000001.10',
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parent: 'mRNA1315',
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],
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gbkey: 'CDS',
gene: 'DLGAP3',
product: 'disks large-associated protein 3',
protein_id: 'NP_001073887.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-2',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
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{
source: 'BestRefSeq',
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strand: -1,
phase: 2,
refName: 'NC_000001.10',
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parent: 'mRNA1315',
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],
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gbkey: 'CDS',
gene: 'DLGAP3',
product: 'disks large-associated protein 3',
protein_id: 'NP_001073887.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-3',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
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strand: -1,
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refName: 'NC_000001.10',
id: 'CDS1270',
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dbxref: [
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],
name: 'NP_001073887.1',
gbkey: 'CDS',
gene: 'DLGAP3',
product: 'disks large-associated protein 3',
protein_id: 'NP_001073887.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-4',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
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strand: -1,
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refName: 'NC_000001.10',
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],
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gbkey: 'CDS',
gene: 'DLGAP3',
product: 'disks large-associated protein 3',
protein_id: 'NP_001073887.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-5',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
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strand: -1,
phase: 2,
refName: 'NC_000001.10',
id: 'CDS1270',
parent: 'mRNA1315',
dbxref: [
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],
name: 'NP_001073887.1',
gbkey: 'CDS',
gene: 'DLGAP3',
product: 'disks large-associated protein 3',
protein_id: 'NP_001073887.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-6',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
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end: 35351886,
strand: -1,
phase: 0,
refName: 'NC_000001.10',
id: 'CDS1270',
parent: 'mRNA1315',
dbxref: [
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],
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gbkey: 'CDS',
gene: 'DLGAP3',
product: 'disks large-associated protein 3',
protein_id: 'NP_001073887.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-7',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
type: 'CDS',
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strand: -1,
phase: 1,
refName: 'NC_000001.10',
id: 'CDS1270',
parent: 'mRNA1315',
dbxref: [
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],
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gbkey: 'CDS',
gene: 'DLGAP3',
product: 'disks large-associated protein 3',
protein_id: 'NP_001073887.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-8',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
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strand: -1,
phase: 0,
refName: 'NC_000001.10',
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parent: 'mRNA1315',
dbxref: [
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],
name: 'NP_001073887.1',
gbkey: 'CDS',
gene: 'DLGAP3',
product: 'disks large-associated protein 3',
protein_id: 'NP_001073887.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-9',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
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strand: -1,
phase: 0,
refName: 'NC_000001.10',
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],
name: 'NP_001073887.1',
gbkey: 'CDS',
gene: 'DLGAP3',
product: 'disks large-associated protein 3',
protein_id: 'NP_001073887.1',
tag: 'RefSeq Select',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-10',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
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{
source: 'BestRefSeq',
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strand: -1,
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refName: 'NC_000001.10',
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gbkey: 'mRNA',
gene: 'DLGAP3',
product: 'DLG associated protein 3',
tag: 'RefSeq Select',
transcript_id: 'NM_001080418.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-11',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
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strand: -1,
phase: 0,
refName: 'NC_000001.10',
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gbkey: 'mRNA',
gene: 'DLGAP3',
product: 'DLG associated protein 3',
tag: 'RefSeq Select',
transcript_id: 'NM_001080418.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-12',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
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product: 'DLG associated protein 3',
tag: 'RefSeq Select',
transcript_id: 'NM_001080418.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-13',
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source: 'BestRefSeq',
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gbkey: 'mRNA',
gene: 'DLGAP3',
product: 'DLG associated protein 3',
tag: 'RefSeq Select',
transcript_id: 'NM_001080418.3',
uniqueId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0-14',
parentId: 'type-Gff3TabixAdapter;type-Gff3TabixAdapter;uri-https://s3.amazonaws.com/jbrowse.org/genomes/hg19/nc-offset-162597949-0',
},
{
source: 'BestRefSeq',
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tag: 'RefSeq Select',
transcript_id: 'NM_001080418.3',
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{
source: 'BestRefSeq',
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tag: 'RefSeq Select',
transcript_id: 'NM_001080418.3',
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},
],
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};