@jbrowse/core
Version:
JBrowse 2 core libraries used by plugins
75 lines (74 loc) • 5 kB
JavaScript
;
var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
if (k2 === undefined) k2 = k;
var desc = Object.getOwnPropertyDescriptor(m, k);
if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
desc = { enumerable: true, get: function() { return m[k]; } };
}
Object.defineProperty(o, k2, desc);
}) : (function(o, m, k, k2) {
if (k2 === undefined) k2 = k;
o[k2] = m[k];
}));
var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
Object.defineProperty(o, "default", { enumerable: true, value: v });
}) : function(o, v) {
o["default"] = v;
});
var __importStar = (this && this.__importStar) || (function () {
var ownKeys = function(o) {
ownKeys = Object.getOwnPropertyNames || function (o) {
var ar = [];
for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
return ar;
};
return ownKeys(o);
};
return function (mod) {
if (mod && mod.__esModule) return mod;
var result = {};
if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
__setModuleDefault(result, mod);
return result;
};
})();
var __importDefault = (this && this.__importDefault) || function (mod) {
return (mod && mod.__esModule) ? mod : { "default": mod };
};
Object.defineProperty(exports, "__esModule", { value: true });
const jsx_runtime_1 = require("react/jsx-runtime");
const react_1 = require("react");
const material_1 = require("@mui/material");
const mobx_react_1 = require("mobx-react");
const hooks_1 = require("./hooks");
const ui_1 = require("../../ui");
const SequenceFeatureMenu_1 = __importDefault(require("./dialogs/SequenceFeatureMenu"));
const SequenceTypeSelector_1 = __importDefault(require("./dialogs/SequenceTypeSelector"));
const SequencePanel = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./SequencePanel'))));
const SequenceDialog = (0, react_1.lazy)(() => Promise.resolve().then(() => __importStar(require('./dialogs/SequenceDialog'))));
const SequenceFeatureDetails = (0, mobx_react_1.observer)(function ({ model, feature, }) {
const { sequenceFeatureDetails } = model;
const { upDownBp } = sequenceFeatureDetails;
const seqPanelRef = (0, react_1.useRef)(null);
const [openInDialog, setOpenInDialog] = (0, react_1.useState)(false);
const [force, setForce] = (0, react_1.useState)(false);
const { sequence, error } = (0, hooks_1.useFeatureSequence)(model, feature, upDownBp, force);
(0, react_1.useEffect)(() => {
sequenceFeatureDetails.setFeature(feature);
}, [sequenceFeatureDetails, feature]);
return ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsxs)("div", { children: [(0, jsx_runtime_1.jsx)(SequenceTypeSelector_1.default, { model: sequenceFeatureDetails }), (0, jsx_runtime_1.jsx)(SequenceFeatureMenu_1.default, { ref: seqPanelRef, model: sequenceFeatureDetails, extraItems: [
{
label: 'Open in dialog',
onClick: () => {
setTimeout(() => {
setOpenInDialog(true);
}, 1);
},
},
] })] }), openInDialog ? ((0, jsx_runtime_1.jsxs)("div", { children: ["Open in dialog...", (0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: (0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, {}), children: (0, jsx_runtime_1.jsx)(SequenceDialog, { model: model, feature: feature, handleClose: () => {
setOpenInDialog(false);
} }) })] })) : ((0, jsx_runtime_1.jsxs)("div", { children: [feature.type === 'gene' ? ((0, jsx_runtime_1.jsx)(material_1.Typography, { children: "Note: inspect subfeature sequences for protein/CDS computations" })) : null, error ? ((0, jsx_runtime_1.jsx)(ui_1.ErrorMessage, { error: error })) : !sequence ? ((0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, {})) : 'error' in sequence ? ((0, jsx_runtime_1.jsxs)(jsx_runtime_1.Fragment, { children: [(0, jsx_runtime_1.jsx)(material_1.Typography, { color: "error", children: sequence.error }), (0, jsx_runtime_1.jsx)(material_1.Button, { variant: "contained", color: "inherit", onClick: () => {
setForce(true);
}, children: "Force load" })] })) : ((0, jsx_runtime_1.jsx)(react_1.Suspense, { fallback: (0, jsx_runtime_1.jsx)(ui_1.LoadingEllipses, {}), children: (0, jsx_runtime_1.jsx)(SequencePanel, { ref: seqPanelRef, feature: feature, sequence: sequence, model: sequenceFeatureDetails }) }))] }))] }));
});
exports.default = SequenceFeatureDetails;