@infect/infect-rda-sample-importer/src/lib/processors/AnresisHumanSampleProcessor.js

INFECT Sample Data Importer

import SampleProcessor from '../SampleProcessor.js';
import HTTP2Client from '@distributed-systems/http2-client';

import AnimalProcessor from '../field/AnimalProcessor.js';
import AnresisHumanMicroorganismProcessor from '../field/AnresisHumanMicroorganismProcessor.js';
import AnresisHumanRegionProcessor from '../field/AnresisHumanRegionProcessor.js';
import AnresisHumanSampleSourceProcessor from '../field/AnresisHumanSampleSourceProcessor.js';
import AnresisHumanSubstanceProcessor from '../field/AnresisHumanSubstanceProcessor.js';
import CountryProcessor from '../field/CountryProcessor.js';
import IsScreeningProcessor from '../field/IsScreeningProcessor.js';
import PatientAgeProcessor from '../field/PatientAgeProcessor.js';
import PatientAgeRangeProcessor from '../field/PatientAgeRangeProcessor.js';
import PatientSettingProcessor from '../field/PatientSettingProcessor.js';
import PatientSexProcessor from '../field/PatientSexProcessor.js';
import ResistanceProcessor from '../field/ResistanceProcessor.js';
import SampleCollectionDateProcessor from '../field/SampleCollectionDateProcessor.js';
import SampleSourceBloodProcessor from '../field/SampleSourceBloodProcessor.js';
import SampleSourceOtherProcessor from '../field/SampleSourceOtherProcessor.js';
import SampleSourceUrineProcessor from '../field/SampleSourceUrineProcessor.js';
import UniqueIdentifierProcessor from '../field/UniqueIdentifierProcessor.js';




export default class AnresisProcessor extends SampleProcessor {


    async load() {
        const httpClient = new HTTP2Client({
            requestsPerSessionPerSecond: this.config.get('api-lookup.max-requests-per-second'),
            maxConcurrentRequests: this.config.get('api-lookup.max-concurrent-requests'),
        });

        httpClient.host(this.config.get('core-data.host'));

        this.registerFieldProcessor(new AnimalProcessor({ httpClient }));
        this.registerFieldProcessor(new AnresisHumanMicroorganismProcessor({ httpClient }));
        this.registerFieldProcessor(new AnresisHumanRegionProcessor({ httpClient }));
        this.registerFieldProcessor(new AnresisHumanSampleSourceProcessor({ httpClient }));
        this.registerFieldProcessor(new AnresisHumanSubstanceProcessor({ httpClient }));
        this.registerFieldProcessor(new CountryProcessor({ httpClient }));
        this.registerFieldProcessor(new IsScreeningProcessor());
        this.registerFieldProcessor(new PatientAgeProcessor());
        this.registerFieldProcessor(new PatientAgeRangeProcessor());
        this.registerFieldProcessor(new PatientSettingProcessor({ httpClient }));
        this.registerFieldProcessor(new PatientSexProcessor({ httpClient }));
        this.registerFieldProcessor(new ResistanceProcessor());
        this.registerFieldProcessor(new SampleCollectionDateProcessor());
        this.registerFieldProcessor(new SampleSourceBloodProcessor());
        this.registerFieldProcessor(new SampleSourceOtherProcessor());
        this.registerFieldProcessor(new SampleSourceUrineProcessor());
        this.registerFieldProcessor(new UniqueIdentifierProcessor());

        await super.load();
    }
}