@hms-dbmi-bgm/react-workflow-viz
Version:
React component for visualizing CWL-like workflows and provenance graphs.
1,122 lines (1,119 loc) • 543 kB
JSON
[
{
"name":"/workflow-runs-awsem/9ef1362f-a319-4ed2-93f7-720a765e5599/",
"meta":{
"analysis_step_types":[
"processing"
],
"@type":[
"WorkflowRunAwsem",
"WorkflowRun",
"Item"
],
"@id":"/workflow-runs-awsem/9ef1362f-a319-4ed2-93f7-720a765e5599/",
"date_created":"2019-11-25T06:01:10.146193+00:00",
"display_title":"workflow_add-readgroups-check v11 run 2019-11-25 06:01:10.109581",
"workflow":{
"@type":[
"Workflow",
"Item"
],
"@id":"/workflows/1ebf697c-949d-46b2-b9a4-8b1a7699ef1f/",
"experiment_types":[
],
"accession":"GAPWFBN35DT2",
"steps":[
{
"name":"add-readgroups",
"meta":{
"software_used":[
"d7ac4c75-e133-4a8e-a19e-b7e87873cc16"
],
"analysis_step_types":[
"Add read groups to bam input file"
]
},
"outputs":[
{
"name":"bam_w_readgroups",
"target":[
{
"name":"bam_w_readgroups",
"step":"integrity-check"
}
],
"meta":{
"cardinality":"single",
"file_format":"bam",
"type":"data file",
"global":true
}
}
],
"inputs":[
{
"name":"input_bam",
"meta":{
"cardinality":"single",
"file_format":"d13d06cf-218e-4f61-aaf0-91f226248b3c",
"type":"data file",
"global":true
},
"source":[
{
"name":"input_bam"
}
]
},
{
"name":"sample_name",
"meta":{
"cardinality":"single",
"global":true,
"type":"parameter"
},
"source":[
{
"name":"sample_name"
}
]
},
{
"name":"nthreads",
"meta":{
"cardinality":"single",
"global":true,
"type":"parameter"
},
"source":[
{
"name":"nthreads"
}
]
}
]
},
{
"name":"integrity-check",
"meta":{
"software_used":[
"3f2d3b0e-0365-4212-9468-c16ad9531c4d"
],
"analysis_step_types":[
"Check integrity of output file"
]
},
"outputs":[
{
"name":"bam_w_readgroups-check",
"target":[
{
"name":"bam_w_readgroups-check"
}
],
"meta":{
"cardinality":"single",
"global":true,
"type":"QC"
}
}
],
"inputs":[
{
"name":"bam_w_readgroups",
"meta":{
"cardinality":"single",
"file_format":"d13d06cf-218e-4f61-aaf0-91f226248b3c",
"type":"data file",
"global":false
},
"source":[
{
"name":"bam_w_readgroups",
"step":"add-readgroups"
}
]
},
{
"name":"count",
"meta":{
"cardinality":"single",
"global":true,
"type":"parameter"
},
"source":[
{
"name":"count"
}
]
}
]
}
],
"display_title":"Add read groups plus output integrity-check - GAPWFBN35DT2",
"category":[
"processing"
],
"uuid":"1ebf697c-949d-46b2-b9a4-8b1a7699ef1f"
},
"run_status":"complete",
"status":"in review"
},
"outputs":[
{
"name":"bam_w_readgroups",
"target":[
{
"name":"bam_w_readgroups"
},
{
"name":"input_bam",
"for_file":"/files-processed/GAPFI9PUMN3F/",
"step":"/workflow-runs-awsem/1acf44d1-d7ce-42be-ba39-31d3c47a93eb/"
},
{
"name":"input_bam",
"for_file":"/files-processed/GAPFI9PUMN3F/",
"step":"/workflow-runs-awsem/1acf44d1-d7ce-42be-ba39-31d3c47a93eb/"
}
],
"run_data":{
"file":[
{
"file_format":{
"file_format":"bam",
"@type":[
"FileFormat",
"Item"
],
"@id":"/file-formats/bam/",
"principals_allowed":{
"view":[
"group.admin",
"group.read-only-admin",
"institution.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989",
"project.12a92962-8265-4fc0-b2f8-cf14f05db58b",
"remoteuser.EMBED",
"remoteuser.INDEXER"
],
"edit":[
"group.admin",
"submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"
]
},
"display_title":"bam",
"uuid":"d13d06cf-218e-4f61-aaf0-91f226248b3c"
},
"quality_metric":{
"display_title":"QualityMetricBamcheck from 2019-11-25",
"@type":[
"QualityMetricBamcheck",
"QualityMetric",
"Item"
],
"@id":"/quality-metrics-bamcheck/38d19a8f-eda7-44db-a3e6-c2c23cc0c43a/",
"principals_allowed":{
"view":[
"group.admin",
"group.read-only-admin",
"institution.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989",
"project.12a92962-8265-4fc0-b2f8-cf14f05db58b",
"remoteuser.EMBED",
"remoteuser.INDEXER"
],
"edit":[
"group.admin",
"submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"
]
},
"uuid":"38d19a8f-eda7-44db-a3e6-c2c23cc0c43a"
},
"accession":"GAPFI9PUMN3F",
"file_size":110764558680,
"display_title":"GAPFI9PUMN3F.bam",
"description":"Intermediate alignment file",
"uuid":"6744d4c8-a0a2-4619-ada4-1f68991fb994",
"status":"uploaded",
"@type":[
"FileProcessed",
"File",
"Item"
],
"@id":"/files-processed/GAPFI9PUMN3F/",
"href":"/files-processed/GAPFI9PUMN3F/@@download/GAPFI9PUMN3F.bam",
"file_type":"intermediate file"
}
],
"meta":[
{
"format":"/file-formats/bam/",
"type":"Output processed file",
"upload_key":"6744d4c8-a0a2-4619-ada4-1f68991fb994/GAPFI9PUMN3F.bam"
}
],
"type":"input"
},
"meta":{
"global":true,
"in_path":true,
"type":"data file"
}
},
{
"name":"bam_w_readgroups-check",
"target":[
{
"name":"bam_w_readgroups-check"
}
],
"run_data":{
"file":[
{
"@type":[
"QualityMetricBamcheck",
"QualityMetric",
"Item"
],
"@id":"/quality-metrics-bamcheck/38d19a8f-eda7-44db-a3e6-c2c23cc0c43a/",
"accession":null,
"display_title":"QualityMetricBamcheck from 2019-11-25",
"uuid":"38d19a8f-eda7-44db-a3e6-c2c23cc0c43a",
"status":"in review"
}
],
"meta":[
{
"type":"Output QC file"
}
],
"type":"input"
},
"meta":{
"global":true,
"in_path":false,
"type":"QC"
}
}
],
"inputs":[
{
"name":"input_bam",
"meta":{
"in_path":true,
"global":true,
"type":"data file"
},
"source":[
{
"name":"raw_bam",
"workflow":"/workflows/9e094699-561b-4396-8d6a-ffc45f98c5e1/",
"for_file":"/files-processed/GAPFI5V1GIRY/",
"step":"/workflow-runs-awsem/d05d398a-0887-4de3-a4cd-a2151b8863f0/"
}
],
"run_data":{
"file":[
{
"file_format":{
"file_format":"bam",
"@type":[
"FileFormat",
"Item"
],
"@id":"/file-formats/bam/",
"principals_allowed":{
"view":[
"group.admin",
"group.read-only-admin",
"institution.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989",
"project.12a92962-8265-4fc0-b2f8-cf14f05db58b",
"remoteuser.EMBED",
"remoteuser.INDEXER"
],
"edit":[
"group.admin",
"submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"
]
},
"display_title":"bam",
"uuid":"d13d06cf-218e-4f61-aaf0-91f226248b3c"
},
"quality_metric":{
"display_title":"QualityMetricBamcheck from 2019-11-25",
"@type":[
"QualityMetricBamcheck",
"QualityMetric",
"Item"
],
"@id":"/quality-metrics-bamcheck/0cbb2e67-0c45-40a0-9aa0-837ff5dec1a1/",
"principals_allowed":{
"view":[
"group.admin",
"group.read-only-admin",
"institution.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989",
"project.12a92962-8265-4fc0-b2f8-cf14f05db58b",
"remoteuser.EMBED",
"remoteuser.INDEXER"
],
"edit":[
"group.admin",
"submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"
]
},
"uuid":"0cbb2e67-0c45-40a0-9aa0-837ff5dec1a1"
},
"accession":"GAPFI5V1GIRY",
"file_size":109338750489,
"display_title":"GAPFI5V1GIRY.bam",
"description":"Intermediate alignment file",
"uuid":"eca5a9ac-f00a-4279-aab9-3f4ed17015c9",
"status":"uploaded",
"@type":[
"FileProcessed",
"File",
"Item"
],
"@id":"/files-processed/GAPFI5V1GIRY/",
"href":"/files-processed/GAPFI5V1GIRY/@@download/GAPFI5V1GIRY.bam",
"file_type":"intermediate file"
}
],
"meta":[
{
"dimension":"0",
"workflow_argument_name":"input_bam",
"ordinal":1
}
],
"type":"input"
}
}
]
},
{
"name":"/workflow-runs-awsem/1acf44d1-d7ce-42be-ba39-31d3c47a93eb/",
"meta":{
"analysis_step_types":[
"processing"
],
"@type":[
"WorkflowRunAwsem",
"WorkflowRun",
"Item"
],
"@id":"/workflow-runs-awsem/1acf44d1-d7ce-42be-ba39-31d3c47a93eb/",
"date_created":"2019-11-25T10:01:28.917978+00:00",
"display_title":"workflow_picard-MarkDuplicates-check v11 run 2019-11-25 10:01:28.882673",
"workflow":{
"@type":[
"Workflow",
"Item"
],
"@id":"/workflows/beb2b340-94ee-4afe-b4e3-66caaf063397/",
"experiment_types":[
],
"accession":"GAPWFLNQ7XTG",
"steps":[
{
"name":"MarkDuplicates",
"meta":{
"software_used":[
"586cef39-6505-4bf6-920a-4b26a500d210"
],
"analysis_step_types":[
"Mark duplicates in bam input file"
]
},
"outputs":[
{
"name":"dupmarked_bam",
"meta":{
"file_format":"bam",
"global":true,
"type":"data file",
"cardinality":"single"
},
"target":[
{
"name":"dupmarked_bam",
"step":"integrity-check"
}
]
},
{
"name":"duplicate_metrics",
"meta":{
"file_format":"txt",
"global":true,
"type":"data file",
"cardinality":"single"
},
"target":[
{
"name":"duplicate_metrics"
}
]
}
],
"inputs":[
{
"name":"input_bam",
"meta":{
"file_format":"d13d06cf-218e-4f61-aaf0-91f226248b3c",
"global":true,
"type":"data file",
"cardinality":"single"
},
"source":[
{
"name":"input_bam"
}
]
},
{
"name":"xmx",
"meta":{
"global":true,
"cardinality":"single",
"type":"parameter"
},
"source":[
{
"name":"xmx"
}
]
},
{
"name":"xms",
"meta":{
"global":true,
"cardinality":"single",
"type":"parameter"
},
"source":[
{
"name":"xms"
}
]
},
{
"name":"max_records_in_ram",
"meta":{
"global":true,
"cardinality":"single",
"type":"parameter"
},
"source":[
{
"name":"max_records_in_ram"
}
]
},
{
"name":"duplicate_pixel_distance",
"meta":{
"global":true,
"cardinality":"single",
"type":"parameter"
},
"source":[
{
"name":"duplicate_pixel_distance"
}
]
}
]
},
{
"name":"integrity-check",
"meta":{
"software_used":[
"3f2d3b0e-0365-4212-9468-c16ad9531c4d"
],
"analysis_step_types":[
"Check integrity of output file"
]
},
"outputs":[
{
"name":"dupmarked_bam-check",
"meta":{
"global":true,
"cardinality":"single",
"type":"report"
},
"target":[
{
"name":"dupmarked_bam-check"
}
]
}
],
"inputs":[
{
"name":"dupmarked_bam",
"meta":{
"file_format":"d13d06cf-218e-4f61-aaf0-91f226248b3c",
"global":false,
"type":"data file",
"cardinality":"single"
},
"source":[
{
"name":"dupmarked_bam",
"step":"MarkDuplicates"
}
]
},
{
"name":"count",
"meta":{
"global":true,
"cardinality":"single",
"type":"parameter"
},
"source":[
{
"name":"count"
}
]
}
]
}
],
"display_title":"Mark duplicates plus output integrity-check - GAPWFLNQ7XTG",
"category":[
"processing"
],
"uuid":"beb2b340-94ee-4afe-b4e3-66caaf063397"
},
"run_status":"complete",
"status":"in review"
},
"outputs":[
{
"name":"dupmarked_bam",
"target":[
{
"name":"dupmarked_bam"
},
{
"name":"input_bam",
"for_file":"/files-processed/GAPFIQHUBRKU/",
"step":"/workflow-runs-awsem/2be2ec26-c846-48bd-9e61-4ebdca8a631a/"
},
{
"name":"input_bam",
"for_file":"/files-processed/GAPFIQHUBRKU/",
"step":"/workflow-runs-awsem/2be2ec26-c846-48bd-9e61-4ebdca8a631a/"
},
{
"name":"input_bam",
"for_file":"/files-processed/GAPFIQHUBRKU/",
"step":"/workflow-runs-awsem/2be2ec26-c846-48bd-9e61-4ebdca8a631a/"
}
],
"run_data":{
"file":[
{
"file_format":{
"file_format":"bam",
"@type":[
"FileFormat",
"Item"
],
"@id":"/file-formats/bam/",
"principals_allowed":{
"view":[
"group.admin",
"group.read-only-admin",
"institution.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989",
"project.12a92962-8265-4fc0-b2f8-cf14f05db58b",
"remoteuser.EMBED",
"remoteuser.INDEXER"
],
"edit":[
"group.admin",
"submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"
]
},
"display_title":"bam",
"uuid":"d13d06cf-218e-4f61-aaf0-91f226248b3c"
},
"quality_metric":{
"display_title":"QualityMetricBamcheck from 2019-11-25",
"@type":[
"QualityMetricBamcheck",
"QualityMetric",
"Item"
],
"@id":"/quality-metrics-bamcheck/85de219f-42ae-4ac2-b7ad-62b7d381baed/",
"principals_allowed":{
"view":[
"group.admin",
"group.read-only-admin",
"institution.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989",
"project.12a92962-8265-4fc0-b2f8-cf14f05db58b",
"remoteuser.EMBED",
"remoteuser.INDEXER"
],
"edit":[
"group.admin",
"submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"
]
},
"uuid":"85de219f-42ae-4ac2-b7ad-62b7d381baed"
},
"accession":"GAPFIQHUBRKU",
"file_size":113357235025,
"display_title":"GAPFIQHUBRKU.bam",
"description":"Intermediate alignment file",
"uuid":"3999a31d-d15d-433e-8bdf-88150fbfcbd4",
"status":"uploaded",
"@type":[
"FileProcessed",
"File",
"Item"
],
"@id":"/files-processed/GAPFIQHUBRKU/",
"href":"/files-processed/GAPFIQHUBRKU/@@download/GAPFIQHUBRKU.bam",
"file_type":"intermediate file"
}
],
"meta":[
{
"format":"/file-formats/bam/",
"type":"Output processed file",
"upload_key":"3999a31d-d15d-433e-8bdf-88150fbfcbd4/GAPFIQHUBRKU.bam"
}
],
"type":"input"
},
"meta":{
"global":true,
"in_path":true,
"type":"data file"
}
},
{
"name":"duplicate_metrics",
"target":[
{
"name":"duplicate_metrics"
}
],
"run_data":{
"file":[
{
"file_format":{
"file_format":"txt",
"@type":[
"FileFormat",
"Item"
],
"@id":"/file-formats/txt/",
"principals_allowed":{
"view":[
"group.admin",
"group.read-only-admin",
"institution.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989",
"project.12a92962-8265-4fc0-b2f8-cf14f05db58b",
"remoteuser.EMBED",
"remoteuser.INDEXER"
],
"edit":[
"group.admin",
"submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"
]
},
"display_title":"txt",
"uuid":"0cd4e777-a596-4927-95c8-b07716121aa3"
},
"@type":[
"FileProcessed",
"File",
"Item"
],
"@id":"/files-processed/GAPFIAST6ER2/",
"file_size":3520,
"accession":"GAPFIAST6ER2",
"display_title":"GAPFIAST6ER2.txt",
"uuid":"1625a872-1546-42f7-9689-b77fa0d1d25f",
"href":"/files-processed/GAPFIAST6ER2/@@download/GAPFIAST6ER2.txt",
"status":"uploaded"
}
],
"meta":[
{
"format":"/file-formats/txt/",
"type":"Output processed file",
"upload_key":"1625a872-1546-42f7-9689-b77fa0d1d25f/GAPFIAST6ER2.txt"
}
],
"type":"input"
},
"meta":{
"global":true,
"in_path":false,
"type":"data file"
}
},
{
"name":"dupmarked_bam-check",
"target":[
{
"name":"dupmarked_bam-check"
}
],
"run_data":{
"file":[
{
"@type":[
"QualityMetricBamcheck",
"QualityMetric",
"Item"
],
"@id":"/quality-metrics-bamcheck/85de219f-42ae-4ac2-b7ad-62b7d381baed/",
"accession":null,
"display_title":"QualityMetricBamcheck from 2019-11-25",
"uuid":"85de219f-42ae-4ac2-b7ad-62b7d381baed",
"status":"in review"
}
],
"meta":[
{
"type":"Output QC file"
}
],
"type":"input"
},
"meta":{
"global":true,
"in_path":false,
"type":"report"
}
}
],
"inputs":[
{
"name":"input_bam",
"meta":{
"in_path":true,
"global":true,
"type":"data file"
},
"source":[
{
"name":"bam_w_readgroups",
"workflow":"/workflows/1ebf697c-949d-46b2-b9a4-8b1a7699ef1f/",
"for_file":"/files-processed/GAPFI9PUMN3F/",
"step":"/workflow-runs-awsem/9ef1362f-a319-4ed2-93f7-720a765e5599/"
}
],
"run_data":{
"file":[
{
"file_format":{
"file_format":"bam",
"@type":[
"FileFormat",
"Item"
],
"@id":"/file-formats/bam/",
"principals_allowed":{
"view":[
"group.admin",
"group.read-only-admin",
"institution.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989",
"project.12a92962-8265-4fc0-b2f8-cf14f05db58b",
"remoteuser.EMBED",
"remoteuser.INDEXER"
],
"edit":[
"group.admin",
"submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"
]
},
"display_title":"bam",
"uuid":"d13d06cf-218e-4f61-aaf0-91f226248b3c"
},
"quality_metric":{
"display_title":"QualityMetricBamcheck from 2019-11-25",
"@type":[
"QualityMetricBamcheck",
"QualityMetric",
"Item"
],
"@id":"/quality-metrics-bamcheck/38d19a8f-eda7-44db-a3e6-c2c23cc0c43a/",
"principals_allowed":{
"view":[
"group.admin",
"group.read-only-admin",
"institution.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989",
"project.12a92962-8265-4fc0-b2f8-cf14f05db58b",
"remoteuser.EMBED",
"remoteuser.INDEXER"
],
"edit":[
"group.admin",
"submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"
]
},
"uuid":"38d19a8f-eda7-44db-a3e6-c2c23cc0c43a"
},
"accession":"GAPFI9PUMN3F",
"file_size":110764558680,
"display_title":"GAPFI9PUMN3F.bam",
"description":"Intermediate alignment file",
"uuid":"6744d4c8-a0a2-4619-ada4-1f68991fb994",
"status":"uploaded",
"@type":[
"FileProcessed",
"File",
"Item"
],
"@id":"/files-processed/GAPFI9PUMN3F/",
"href":"/files-processed/GAPFI9PUMN3F/@@download/GAPFI9PUMN3F.bam",
"file_type":"intermediate file"
}
],
"meta":[
{
"dimension":"0",
"workflow_argument_name":"input_bam",
"ordinal":1
}
],
"type":"input"
}
}
]
},
{
"name":"/workflow-runs-awsem/2be2ec26-c846-48bd-9e61-4ebdca8a631a/",
"meta":{
"analysis_step_types":[
"processing"
],
"@type":[
"WorkflowRunAwsem",
"WorkflowRun",
"Item"
],
"@id":"/workflow-runs-awsem/2be2ec26-c846-48bd-9e61-4ebdca8a631a/",
"date_created":"2019-11-25T21:01:26.578249+00:00",
"display_title":"workflow_sort-bam-check v11 run 2019-11-25 21:01:26.551370",
"workflow":{
"@type":[
"Workflow",
"Item"
],
"@id":"/workflows/560f5194-cd3a-4799-9b1a-6a2d2c371c89/",
"experiment_types":[
],
"accession":"GAPWFIFWUPJP",
"steps":[
{
"name":"sort",
"meta":{
"software_used":[
"3f2d3b0e-0365-4212-9468-c16ad9531c4d"
],
"analysis_step_types":[
"Sort bam input file"
]
},
"outputs":[
{
"name":"sorted_bam",
"meta":{
"file_format":"bam",
"global":true,
"type":"data file",
"cardinality":"single"
},
"target":[
{
"name":"sorted_bam",
"step":"integrity-check"
}
]
}
],
"inputs":[
{
"name":"input_bam",
"meta":{
"file_format":"d13d06cf-218e-4f61-aaf0-91f226248b3c",
"global":true,
"type":"data file",
"cardinality":"single"
},
"source":[
{
"name":"input_bam"
}
]
},
{
"name":"max_memory",
"meta":{
"global":true,
"cardinality":"single",
"type":"parameter"
},
"source":[
{
"name":"max_memory"
}
]
},
{
"name":"nthreads",
"meta":{
"global":true,
"cardinality":"single",
"type":"parameter"
},
"source":[
{
"name":"nthreads"
}
]
}
]
},
{
"name":"integrity-check",
"meta":{
"software_used":[
"3f2d3b0e-0365-4212-9468-c16ad9531c4d"
],
"analysis_step_types":[
"Check integrity of output file"
]
},
"outputs":[
{
"name":"sorted_bam-check",
"meta":{
"global":true,
"cardinality":"single",
"type":"QC"
},
"target":[
{
"name":"sorted_bam-check"
}
]
}
],
"inputs":[
{
"name":"sorted_bam",
"meta":{
"file_format":"d13d06cf-218e-4f61-aaf0-91f226248b3c",
"global":false,
"type":"data file",
"cardinality":"single"
},
"source":[
{
"name":"sorted_bam",
"step":"sort"
}
]
},
{
"name":"count",
"meta":{
"global":true,
"cardinality":"single",
"type":"parameter"
},
"source":[
{
"name":"count"
}
]
}
]
}
],
"display_title":"Sort bam file plus output integrity-check - GAPWFIFWUPJP",
"category":[
"processing"
],
"uuid":"560f5194-cd3a-4799-9b1a-6a2d2c371c89"
},
"run_status":"complete",
"status":"in review"
},
"outputs":[
{
"name":"sorted_bam",
"target":[
{
"name":"sorted_bam"
},
{
"name":"input_bam",
"for_file":"/files-processed/GAPFISSWY513/",
"step":"/workflow-runs-awsem/5c565340-5f12-4d30-b043-0e4fadcd71f5/"
},
{
"name":"input_bam",
"for_file":"/files-processed/GAPFISSWY513/",
"step":"/workflow-runs-awsem/843f2c0d-084e-4f2a-bf3b-693f3dd5a406/"
},
{
"name":"input_bam",
"for_file":"/files-processed/GAPFISSWY513/",
"step":"/workflow-runs-awsem/5c565340-5f12-4d30-b043-0e4fadcd71f5/"
},
{
"name":"input_bam",
"for_file":"/files-processed/GAPFISSWY513/",
"step":"/workflow-runs-awsem/843f2c0d-084e-4f2a-bf3b-693f3dd5a406/"
}
],
"run_data":{
"file":[
{
"file_format":{
"file_format":"bam",
"@type":[
"FileFormat",
"Item"
],
"@id":"/file-formats/bam/",
"principals_allowed":{
"view":[
"group.admin",
"group.read-only-admin",
"institution.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989",
"project.12a92962-8265-4fc0-b2f8-cf14f05db58b",
"remoteuser.EMBED",
"remoteuser.INDEXER"
],
"edit":[
"group.admin",
"submits_for.828cd4fe-ebb0-4b36-a94a-d2e3a36cc989"
]
},
"display_title":"bam",
"uuid":"d13d06cf-218e-4f61-aaf0-91f226248b3c"
},
"quality_metric":{
"display_title":"QualityMetricBamcheck from 2019-11-25",
"@type":[
"QualityMetricBamcheck",
"QualityMetric",
"Item"
],
"@id":"/quality-metrics-bamcheck/ded50f6d-a746-466c-abf6-7715fba65da6/",
"uuid":"ded50f6d-a746-466c-abf6-7715fba65da6",
"principals_allowed":{
"view":[
"group.admin",
"group.