@gmod/vcf
Version:
High performance streaming Variant Call Format (VCF) parser in pure JavaScript
336 lines (335 loc) • 7.42 kB
TypeScript
declare const _default: {
InfoFields: {
AA: {
Number: number;
Type: string;
Description: string;
};
AC: {
Number: string;
Type: string;
Description: string;
};
AD: {
Number: string;
Type: string;
Description: string;
};
ADF: {
Number: string;
Type: string;
Description: string;
};
ADR: {
Number: string;
Type: string;
Description: string;
};
AF: {
Number: string;
Type: string;
Description: string;
};
AN: {
Number: number;
Type: string;
Description: string;
};
BQ: {
Number: number;
Type: string;
Description: string;
};
CIGAR: {
Number: number;
Type: string;
Description: string;
};
DB: {
Number: number;
Type: string;
Description: string;
};
DP: {
Number: number;
Type: string;
Description: string;
};
END: {
Number: number;
Type: string;
Description: string;
};
H2: {
Number: number;
Type: string;
Description: string;
};
H3: {
Number: number;
Type: string;
Description: string;
};
MQ: {
Number: number;
Type: null;
Description: string;
};
MQ0: {
Number: number;
Type: string;
Description: string;
};
NS: {
Number: number;
Type: string;
Description: string;
};
SB: {
Number: number;
Type: string;
Description: string;
};
SOMATIC: {
Number: number;
Type: string;
Description: string;
};
VALIDATED: {
Number: number;
Type: string;
Description: string;
};
'1000G': {
Number: number;
Type: string;
Description: string;
};
IMPRECISE: {
Number: number;
Type: string;
Description: string;
};
NOVEL: {
Number: number;
Type: string;
Description: string;
};
SVTYPE: {
Number: number;
Type: string;
Description: string;
};
SVLEN: {
Number: null;
Type: string;
Description: string;
};
CIPOS: {
Number: number;
Type: string;
Description: string;
};
CIEND: {
Number: number;
Type: string;
Description: string;
};
HOMLEN: {
Type: string;
Description: string;
};
HOMSEQ: {
Type: string;
Description: string;
};
BKPTID: {
Type: string;
Description: string;
};
MEINFO: {
Number: number;
Type: string;
Description: string;
};
METRANS: {
Number: number;
Type: string;
Description: string;
};
DGVID: {
Number: number;
Type: string;
Description: string;
};
DBVARID: {
Number: number;
Type: string;
Description: string;
};
DBRIPID: {
Number: number;
Type: string;
Description: string;
};
MATEID: {
Number: null;
Type: string;
Description: string;
};
PARID: {
Number: number;
Type: string;
Description: string;
};
EVENT: {
Number: number;
Type: string;
Description: string;
};
CILEN: {
Number: number;
Type: string;
Description: string;
};
DPADJ: {
Type: string;
Description: string;
};
CN: {
Number: number;
Type: string;
Description: string;
};
CNADJ: {
Number: null;
Type: string;
Description: string;
};
CICN: {
Number: number;
Type: string;
Description: string;
};
CICNADJ: {
Number: null;
Type: string;
Description: string;
};
};
GenotypeFields: {
AD: {
Number: string;
Type: string;
Description: string;
};
ADF: {
Number: string;
Type: string;
Description: string;
};
ADR: {
Number: string;
Type: string;
Description: string;
};
DP: {
Number: number;
Type: string;
Description: string;
};
EC: {
Number: string;
Type: string;
Description: string;
};
FT: {
Number: number;
Type: string;
Description: string;
};
GL: {
Number: string;
Type: string;
Description: string;
};
GP: {
Number: string;
Type: string;
Description: string;
};
GQ: {
Number: number;
Type: string;
Description: string;
};
GT: {
Number: number;
Type: string;
Description: string;
};
HQ: {
Number: number;
Type: string;
Description: string;
};
MQ: {
Number: number;
Type: string;
Description: string;
};
PL: {
Number: string;
Type: string;
Description: string;
};
PQ: {
Number: number;
Type: string;
Description: string;
};
PS: {
Number: number;
Type: string;
Description: string;
};
};
AltTypes: {
DEL: {
Description: string;
};
INS: {
Description: string;
};
DUP: {
Description: string;
};
INV: {
Description: string;
};
CNV: {
Description: string;
};
'DUP:TANDEM': {
Description: string;
};
'DEL:ME': {
Description: string;
};
'INS:ME': {
Description: string;
};
NON_REF: {
Description: string;
};
'*': {
Description: string;
};
};
FilterTypes: {
PASS: {
Description: string;
};
};
};
export default _default;