@gmod/jbrowse
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JBrowse - client-side genome browser
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<html><head><meta charSet="utf-8"/><meta http-equiv="X-UA-Compatible" content="IE=edge"/><title>JBrowse · A fast, embeddable genome browser built with HTML5 and JavaScript</title><meta name="viewport" content="width=device-width"/><meta name="generator" content="Docusaurus"/><meta name="description" content="A fast, embeddable genome browser built with HTML5 and JavaScript"/><meta property="og:title" content="JBrowse · A fast, embeddable genome browser built with HTML5 and JavaScript"/><meta property="og:type" content="website"/><meta property="og:url" content="https://jbrowse.org/index.html"/><meta property="og:description" content="A fast, embeddable genome browser built with HTML5 and JavaScript"/><meta name="twitter:card" content="summary"/><link rel="shortcut icon" href="/img/favicon.ico"/><link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/default.min.css"/><link rel="alternate" type="application/atom+xml" href="https://jbrowse.org/blog/atom.xml" title="JBrowse Blog ATOM Feed"/><link rel="alternate" type="application/rss+xml" href="https://jbrowse.org/blog/feed.xml" title="JBrowse Blog RSS Feed"/><script type="text/javascript" src="https://buttons.github.io/buttons.js"></script><link rel="stylesheet" href="/css/main.css"/></head><body><div class="fixedHeaderContainer"><div class="headerWrapper wrapper"><header><a href="/"><h2 class="headerTitle">JBrowse</h2></a><div class="navigationWrapper navigationSlider"><nav class="slidingNav"><ul class="nav-site nav-site-internal"><li class=""><a href="/blog" target="_self">Blog</a></li><li class=""><a href="/docs/installation.html" target="_self">Documentation</a></li><li class=""><a href="/demos.html" target="_self">Demos</a></li><li class=""><a href="/developers.html" target="_self">Developers</a></li><li class=""><a href="/contact.html" target="_self">Contact</a></li><li class=""><a href="/references.html" target="_self">References</a></li><li class=""><a href="/help.html" target="_self">Help</a></li></ul></nav></div></header></div></div><div class="navPusher"><div class="container mainContainer documentContainer postContainer"><div class="wrapper"><div class="flexContainer" style="display:flex"><div><div class="paddingBottom" style="text-align:left"><h1>The JBrowse Genome Browser</h1><p>JBrowse is a fast, scalable genome browser built completely with JavaScript and HTML5. It can run on your desktop, or be embedded in your website.</p><b><a href="blog/">Download latest release – JBrowse 1.16.6</a></b></div><iframe width="100%" height="600" src="https://jbrowse.org/code/JBrowse-1.16.6/?loc=ctgA%3A9892..32101&tracks=DNA%2CTranscript%2Cvolvox_microarray_bw_density%2Cvolvox_microarray_bw_xyplot%2Cvolvox-sorted-vcf%2Cvolvox-sorted_bam_coverage%2Cvolvox-sorted_bam&data=sample_data%2Fjson%2Fvolvox&tracklist=0"></iframe><div class="mainContainer"><div class="paddingBottom" style="text-align:left"><h2>Features:</h2><ul><li>Fast, smooth scrolling and zooming. Explore your genome with unparalleled speed.</li><li>Scales easily to multi-gigabase genomes and deep-coverage sequencing.</li><li>Quickly open and view data files on your computer without uploading them to any server.</li><li>Supports GFF3, BED, FASTA, Wiggle, BigWig, BAM, CRAM, VCF (with either .tbi or .idx index), REST, and more. BAM, BigBed, BigWig, and VCF data are displayed directly from chunks of the compressed binary files, no conversion needed.</li><li>Includes an optional “faceted” track selector (<a href="https://jbrowse.org/code/JBrowse-1.16.6/index.html?data=sample_data/json/modencode">see demo</a>) suitable for large installations with thousands of tracks.</li><li>Very light server resource requirements. In fact, JBrowse has no back-end server code, it just reads chunks of files directly over HTTP using <a href="https://developer.mozilla.org/en-US/docs/Web/HTTP/Range_requests">byte-range requests</a>. You can serve huge datasets from a single low-cost cloud instance.</li><li>JBrowse Desktop runs as a stand-alone app on Windows, Mac OS, and Linux.</li><li>Highly extensible plugin architecture, with a <a href="https://gmod.github.io/jbrowse-registry">large registry of plugins</a>.</li></ul></div><div class="paddingBottom" style="text-align:left"><h2>Browser Compatibility</h2><p>The latest release of JBrowse is tested to work with the following web browsers:</p><ul><li>Mozilla Firefox (10 and later)</li><li>Google Chrome (17 and later)</li><li>Apple Safari (9 and later)</li><li>Microsoft Internet Explorer (11 and later)</li></ul><p>Server-side code, which is used only to pre-generate static data files (no CGI), requires only BioPerl and a few other CPAN modules. The result is a cross-platform AJAX genome browser that is easy to install, embed and customize.</p><p>JBrowse is a <a href="http://gmod.org">GMOD</a> project.</p></div><div class="paddingBottom" style="text-align:left"><h2>Funding</h2><p>JBrowse development is funded by the <a href="http://genome.gov/">NHGRI</a>.</p><h2>Citing JBrowse</h2><p>If you use JBrowse in a project that you publish, please cite the most recent JBrowse paper listed on the <a href="references.html">References</a> page</p><h2>License</h2><p>JBrowse is released under the GNU LGPL or the Artistic License, see the JBrowse <a href="https://jbrowse.org/code/JBrowse-1.16.6/LICENSE">LICENSE</a> file.</p></div></div></div><div style="margin:20px"><a class="twitter-timeline" data-width="300" data-height="500" href="https://twitter.com/JBrowseGossip?ref_src=twsrc%5Etfw">Tweets by JBrowseGossip</a><script async="" src="https://platform.twitter.com/widgets.js" charSet="utf-8"></script></div></div></div></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><h5>Docs</h5><a href="/blog">Blog</a><a href="/docs/tutorial.html">Getting Started</a></div><div><h5>Community</h5><a href="https://gitter.im/GMOD/jbrowse">Project Chat</a><a href="https://twitter.com/JBrowseGossip" target="_blank" rel="noreferrer noopener">Twitter</a></div><div><h5>More</h5><a href="https://github.com/GMOD/jbrowse">GitHub</a><a class="github-button" href="https://github.com/GMOD/jbrowse" data-icon="octicon-star" data-count-href="/GMOD/jbrowse/stargazers" data-show-count="true" data-count-aria-label="# stargazers on GitHub" aria-label="Star this project on GitHub">Star</a></div></section><section class="copyright">Copyright © 2019 Evolutionary Software Foundation</section></footer></div></body></html>