@gmod/jbrowse
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JBrowse - client-side genome browser
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<html><head><meta charSet="utf-8"/><meta http-equiv="X-UA-Compatible" content="IE=edge"/><title>JBrowse · A fast, embeddable genome browser built with HTML5 and JavaScript</title><meta name="viewport" content="width=device-width"/><meta name="generator" content="Docusaurus"/><meta name="description" content="A fast, embeddable genome browser built with HTML5 and JavaScript"/><meta property="og:title" content="JBrowse · A fast, embeddable genome browser built with HTML5 and JavaScript"/><meta property="og:type" content="website"/><meta property="og:url" content="https://jbrowse.org/index.html"/><meta property="og:description" content="A fast, embeddable genome browser built with HTML5 and JavaScript"/><meta name="twitter:card" content="summary"/><link rel="shortcut icon" href="/img/favicon.ico"/><link rel="stylesheet" href="//cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/default.min.css"/><link rel="alternate" type="application/atom+xml" href="https://jbrowse.org/blog/atom.xml" title="JBrowse Blog ATOM Feed"/><link rel="alternate" type="application/rss+xml" href="https://jbrowse.org/blog/feed.xml" title="JBrowse Blog RSS Feed"/><script type="text/javascript" src="https://buttons.github.io/buttons.js"></script><link rel="stylesheet" href="/css/main.css"/></head><body><div class="fixedHeaderContainer"><div class="headerWrapper wrapper"><header><a href="/"><h2 class="headerTitle">JBrowse</h2></a><div class="navigationWrapper navigationSlider"><nav class="slidingNav"><ul class="nav-site nav-site-internal"><li class=""><a href="/blog" target="_self">Blog</a></li><li class=""><a href="/docs/installation.html" target="_self">Documentation</a></li><li class="siteNavItemActive"><a href="/demos.html" target="_self">Demos</a></li><li class=""><a href="/developers.html" target="_self">Developers</a></li><li class=""><a href="/contact.html" target="_self">Contact</a></li><li class=""><a href="/references.html" target="_self">References</a></li><li class=""><a href="/help.html" target="_self">Help</a></li></ul></nav></div></header></div></div><div class="navPusher"><div class="container mainContainer documentContainer postContainer"><div class="wrapper"><h3>Latest release</h3><ul><li><a title="Volvox example data" href="https://jbrowse.org/code/JBrowse-1.16.6/?loc=ctgA%3A9900..32510&amp;tracks=DNA%2CTranscript%2Cvolvox-sorted-vcf%2Cvolvox-sorted_bam%2Cvolvox_microarray_bw_xyplot%2Cvolvox_microarray_bw_density&amp;data=sample_data%2Fjson%2Fvolvox&amp;highlight=" target="_blank"><i>Volvox mythicus</i> example/test data</a> - the latest JBrowse release, showing the primary test data set used in development. Includes demonstrations of all major JBrowse track types, including direct display of BAM alignments and coverage, direct display of BigWig data, and more. This data is made up for demonstration purposes.</li><li><a title="view faceted track selector demo - hit "Select tracks" on the left" href="https://jbrowse.org/code/JBrowse-1.16.6/index.html?data=sample_data/json/modencode" target="_blank">Faceted track selection demo</a> - running in the latest JBrowse release with over 1,800 tracks. Based on a snapshot of the modENCODE track metadata taken from <a href="http://data.modencode.org" target="_blank">http://data.modencode.org</a>. Note that the actual track data and reference sequences in this track selection demo are just made-up test data.</li><li><a href="http://jbrowse.org/code/JBrowse-1.12.5/compat_121.html?data=/genomes/ucsc_hg19" target="_blank">Human hg19 genes</a> - a demonstration of a large dataset. From UCSC Genome Database - <a href="https://genome.ucsc.edu" target="_blank">https://genome.ucsc.edu</a></li><li><a title="D. melanogaster JBrowse" href="https://jbrowse.org/code/JBrowse-1.16.6/?data=%2Fgenomes%2Fflybase-dmel-5.52-genes&amp;loc=2L%3A10283901..10390066&amp;tracks=DNA%2CGenes" target="_blank"><em>Drosophila melanogaster</em> genes</a> - from FlyBase release 5.52. Good demonstration of JBrowse 1.12.0 canvas-based gene glyphs.</li></ul><h3>Older instances</h3><ul><li><a href="http://jbrowse.org/genomes/tomato/?loc=SL2.40ch10%3A30019461..30040900&tracks=DNA%2Crnaseq%2Cgenes"><em>Solanum lycopersicum</em> (tomato)</a> - running in JBrowse 1.5.0, including a BigWig track showing RNA-Seq coverage</li><li><em><a href="http://jbrowse.org/genomes/dmel/">Drosophila melanogaster</a></em> genome running in JBrowse 1.2.0</li><li><a href="http://jbrowse.org/ucsc/hg19/touch.html?loc=chr1:208,056,300..208,073,080&tracks=DNA,knownGene,ccdsGene,snp131,pgWatson,simpleRepeat"><em>Homo sapiens</em></a> — hg19 sequence and several annotation tracks from UCSC (touchscreen-enabled for iPad) running in JBrowse 1.1.0</li></ul><h3>Movies</h3><ul><li><a href="http://www.youtube.com/watch?v=-X03_f158m0">JBrowse on a desktop Mac with a touchscreen display</a></li><li><a href="http://www.youtube.com/watch?v=FMVtxTt6KCg">JBrowse on the iPad</a></li></ul></div></div><footer class="nav-footer" id="footer"><section class="sitemap"><div><h5>Docs</h5><a href="/blog">Blog</a><a href="/docs/tutorial.html">Getting Started</a></div><div><h5>Community</h5><a href="https://gitter.im/GMOD/jbrowse">Project Chat</a><a href="https://twitter.com/JBrowseGossip" target="_blank" rel="noreferrer noopener">Twitter</a></div><div><h5>More</h5><a href="https://github.com/GMOD/jbrowse">GitHub</a><a class="github-button" href="https://github.com/GMOD/jbrowse" data-icon="octicon-star" data-count-href="/GMOD/jbrowse/stargazers" data-show-count="true" data-count-aria-label="# stargazers on GitHub" aria-label="Star this project on GitHub">Star</a></div></section><section class="copyright">Copyright © 2019 Evolutionary Software Foundation</section></footer></div></body></html>