@gmod/jbrowse

<?xml version="1.0" encoding="utf-8"?> <rss version="2.0"> <channel> <title>JBrowse Blog</title> <link>https://jbrowse.org/blog</link> <description>The best place to stay up-to-date with the latest JBrowse news and events.</description> <lastBuildDate>Thu, 11 Jul 2019 06:00:00 GMT</lastBuildDate> <docs>http://blogs.law.harvard.edu/tech/rss</docs> <generator>Feed for Node.js</generator> <image> <title>JBrowse Blog</title> <url>https://jbrowse.org/undefined</url> <link>https://jbrowse.org/blog</link> </image> <copyright>Copyright © 2019 Evolutionary Software Foundation</copyright> <item> <title><![CDATA[JBrowse 1.16.6 maintenance release]]></title> <link>https://jbrowse.org/blog/2019/07/11/jbrowse-1-16-6.html</link> <guid>https://jbrowse.org/blog/2019/07/11/jbrowse-1-16-6.html</guid> <pubDate>Thu, 11 Jul 2019 06:00:00 GMT</pubDate> <description><![CDATA[Hi all This is a small release that adds a fix for side-scrolling on Macs, where the touchpad would trigger the browsers back action. <ul> <li><a href="https://github.com/GMOD/jbrowse/releases/download/1.16.6-release/JBrowse-1.16.6.zip">JBrowse-1.16.6.zip</a> - min</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.16.5 maintenance release]]></title> <link>https://jbrowse.org/blog/2019/06/12/jbrowse-1-16-5.html</link> <guid>https://jbrowse.org/blog/2019/06/12/jbrowse-1-16-5.html</guid> <pubDate>Wed, 12 Jun 2019 06:00:00 GMT</pubDate> <description><![CDATA[I am pleased to announce the release of JBrowse 1.16.5. This includes some name regularization fixes (e.g. when you have chr1 and 1 it tries to map to the same thing), some bigwig fixes, a small speedup for BAM data, and more. Please read the release ]]></description> </item> <item> <title><![CDATA[JBrowse 1.16.4 maintenance release]]></title> <link>https://jbrowse.org/blog/2019/04/10/jbrowse-1-16-4.html</link> <guid>https://jbrowse.org/blog/2019/04/10/jbrowse-1-16-4.html</guid> <pubDate>Wed, 10 Apr 2019 06:00:00 GMT</pubDate> <description><![CDATA[I'm pleased to announce the release of JBrowse 1.16.4. This has a couple of specialized fixes. One fix provides a better error message if you give improper inputs for tabix or BAI files that actually require CSI indexes. This came up often for peopl ]]></description> </item> <item> <title><![CDATA[JBrowse 1.16.3 maintenance release]]></title> <link>https://jbrowse.org/blog/2019/02/20/jbrowse-1-16-3.html</link> <guid>https://jbrowse.org/blog/2019/02/20/jbrowse-1-16-3.html</guid> <pubDate>Wed, 20 Feb 2019 06:00:00 GMT</pubDate> <description><![CDATA[Hello all, this is a small maintenance release that most importantly addresses compatibility that was causing setup.sh to fail on many installations by fixing a missing BioPerl package that was removed from their core distribution. If you are stuck w ]]></description> </item> <item> <title><![CDATA[JBrowse 1.16.2 maintenance release]]></title> <link>https://jbrowse.org/blog/2019/01/31/jbrowse-1-16-2.html</link> <guid>https://jbrowse.org/blog/2019/01/31/jbrowse-1-16-2.html</guid> <pubDate>Thu, 31 Jan 2019 06:00:00 GMT</pubDate> <description><![CDATA[I'm happy to announce the release of 1.16.2, it is a smaller maintenance release. It contains several fixes including for CSI in BAM files, and several other small fixes. Thanks to everyone for communicating requests and bug reports <ul> <li>[JBrowse-1.1</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.16.1 maintenance release]]></title> <link>https://jbrowse.org/blog/2018/12/27/jbrowse-1-16-1.html</link> <guid>https://jbrowse.org/blog/2018/12/27/jbrowse-1-16-1.html</guid> <pubDate>Thu, 27 Dec 2018 06:00:00 GMT</pubDate> <description><![CDATA[I'm pleased to announce the release of JBrowse 1.16.1! This release offers a variety of small bugfixes for cross-origin resource fetching, BAM files, and JBrowse desktop. It also contains a fix that helps very large track lists to have a faster init ]]></description> </item> <item> <title><![CDATA[JBrowse 1.16.0 maintenance release]]></title> <link>https://jbrowse.org/blog/2018/12/13/jbrowse-1-16-0.html</link> <guid>https://jbrowse.org/blog/2018/12/13/jbrowse-1-16-0.html</guid> <pubDate>Thu, 13 Dec 2018 06:00:00 GMT</pubDate> <description><![CDATA[I am very pleased to announce the release of JBrowse version 1.16.0! A major new feature of this release is the introduction of paired read visualization options! And rather than delivering just one type of paired read visualization, there are many ]]></description> </item> <item> <title><![CDATA[JBrowse 1.15.4 maintenance release]]></title> <link>https://jbrowse.org/blog/2018/10/05/jbrowse-1-15-4.html</link> <guid>https://jbrowse.org/blog/2018/10/05/jbrowse-1-15-4.html</guid> <pubDate>Fri, 05 Oct 2018 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.15.4 has been released! This release allows you to use bgzip indexed FASTA, adds a new <code>categoryOrder</code> config for sorting the Hierarchical track selector, and more! Thanks to everyone for their feature requests and bug reports, and enjoy! ]]></description> </item> <item> <title><![CDATA[JBrowse 1.15.3 maintenance release]]></title> <link>https://jbrowse.org/blog/2018/08/29/jbrowse-1-15-3.html</link> <guid>https://jbrowse.org/blog/2018/08/29/jbrowse-1-15-3.html</guid> <pubDate>Wed, 29 Aug 2018 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.15.3 has been released! This contains an bugfix introduced in 1.15.0 where typing a reference sequence name in the search bar did not navigate to it properly. It also contains a cool feature where "ultra minimal configs" can be specified by ]]></description> </item> <item> <title><![CDATA[JBrowse 1.15.2 maintenance release]]></title> <link>https://jbrowse.org/blog/2018/08/16/jbrowse-1.15.2-maintenance-release-index.html</link> <guid>https://jbrowse.org/blog/2018/08/16/jbrowse-1.15.2-maintenance-release-index.html</guid> <pubDate>Thu, 16 Aug 2018 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.15.2 has been released! This contains a couple nice features including estimating feature density directly from the index file of BAM, VCF, and other tabix formats. We also updated the website with a new blogging and documentation platform! ]]></description> </item> <item> <title><![CDATA[JBrowse 1.15.1 maintenance release]]></title> <link>https://jbrowse.org/blog/2018/08/01/jbrowse-1-15-1-index.html</link> <guid>https://jbrowse.org/blog/2018/08/01/jbrowse-1-15-1-index.html</guid> <pubDate>Wed, 01 Aug 2018 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.15.1 has been released! <h2><a class="anchor" aria-hidden="true" id="files-for-download"></a><a href="#files-for-download" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Files for download</h2> <ul> <li><a href="https://github.com/GMOD/jbrowse/releases/download/1.15.1-release/JBrowse-1.15.1.zip">JBrowse-1.15.1.zip</a> - 3.2M file SHA1 71284c64391798cb2b6648bac125522af1ba17a2</li> <li>[JBrowse-1.15.1-dev</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.15.0 release - CRAM support, CSI indexes, and on the desktop!]]></title> <link>https://jbrowse.org/blog/2018/07/19/jbrowse-1-15-0-release-index.html</link> <guid>https://jbrowse.org/blog/2018/07/19/jbrowse-1-15-0-release-index.html</guid> <pubDate>Thu, 19 Jul 2018 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.15.0 has been released! This is a really big one. At long last, JBrowse can open and view CRAM v2 and v3 files just like BAM. In fact, viewing CRAM files can sometimes be even faster than viewing BAM files, because there is less data to mo ]]></description> </item> <item> <title><![CDATA[JBrowse 1.14.2 maintenance release]]></title> <link>https://jbrowse.org/blog/2018/06/04/jbrowse-1-14-2-index.html</link> <guid>https://jbrowse.org/blog/2018/06/04/jbrowse-1-14-2-index.html</guid> <pubDate>Mon, 04 Jun 2018 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.14.2 has been released! <h2><a class="anchor" aria-hidden="true" id="files-for-download"></a><a href="#files-for-download" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Files for download</h2> <ul> <li><a href="https://github.com/GMOD/jbrowse/releases/download/1.14.2-release/JBrowse-1.14.2.zip" title="download JBrowse-1.14.2.zip">JBrowse-1.14.2.zip</a> - 2.8M file SHA1 77c28aa4e00b93b1f1e72c5071aee77e7ea</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.14.1 maintenance release]]></title> <link>https://jbrowse.org/blog/2018/05/02/jbrowse-1-14-1-maintenance-release-index.html</link> <guid>https://jbrowse.org/blog/2018/05/02/jbrowse-1-14-1-maintenance-release-index.html</guid> <pubDate>Wed, 02 May 2018 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.14.1 has been released! <h2><a class="anchor" aria-hidden="true" id="files-for-download"></a><a href="#files-for-download" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Files for download</h2> <ul> <li><a href="https://github.com/GMOD/jbrowse/releases/download/1.14.1-release/JBrowse-1.14.1.zip" title="download JBrowse-1.14.1.zip">JBrowse-1.14.1.zip</a> - 2.8M file SHA1 f41c89826db00afc4b78a37a255aa6b43c3</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.14.0 release - iframe-less embedding, BigBed support]]></title> <link>https://jbrowse.org/blog/2018/04/18/jbrowse-1-14-0-release-index.html</link> <guid>https://jbrowse.org/blog/2018/04/18/jbrowse-1-14-0-release-index.html</guid> <pubDate>Wed, 18 Apr 2018 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.14.0 has been released! This release includes two major improvements, the first being that it's no longer strictly necessary to run JBrowse inside an <code><iframe></code> when embedding it in another site or webpage. Big thanks to Lacey Sanderson fo ]]></description> </item> <item> <title><![CDATA[JBrowse 1.13.1 maintenance release]]></title> <link>https://jbrowse.org/blog/2018/03/28/jbrowse-1-13-1-maintenance-release-index.html</link> <guid>https://jbrowse.org/blog/2018/03/28/jbrowse-1-13-1-maintenance-release-index.html</guid> <pubDate>Wed, 28 Mar 2018 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.13.1 has been released! <h2><a class="anchor" aria-hidden="true" id="files-for-download"></a><a href="#files-for-download" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Files for download</h2> <ul> <li><a href="https://github.com/GMOD/jbrowse/releases/download/1.13.1-release/JBrowse-1.13.1.zip" title="download JBrowse-1.13.1.zip">JBrowse-1.13.1.zip</a> - 2.7M file SHA1 a22df76b7e970af9c7c6bda36ebdc418134</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.13.0 release - now with webpack!]]></title> <link>https://jbrowse.org/blog/2018/03/15/jbrowse-1-13-0-release-index.html</link> <guid>https://jbrowse.org/blog/2018/03/15/jbrowse-1-13-0-release-index.html</guid> <pubDate>Thu, 15 Mar 2018 06:00:00 GMT</pubDate> <description><![CDATA[I'm pleased to announce that JBrowse 1.13.0 has been released! There are actually not a huge number of new features in this release, but there has been a significant change in the way JBrowse is built behind the scenes, and the introduction of a sli ]]></description> </item> <item> <title><![CDATA[JBrowse 1.12.5 maintenance release]]></title> <link>https://jbrowse.org/blog/2018/02/28/jbrowse-1-12-5-maintenance-release-index.html</link> <guid>https://jbrowse.org/blog/2018/02/28/jbrowse-1-12-5-maintenance-release-index.html</guid> <pubDate>Wed, 28 Feb 2018 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.12.5 has been released! <h2><a class="anchor" aria-hidden="true" id="files-for-download"></a><a href="#files-for-download" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Files for download</h2> <ul> <li><a href="https://github.com/GMOD/jbrowse/releases/download/1.12.5-release/JBrowse-1.12.5.zip" title="download JBrowse-1.12.4.zip">JBrowse-1.12.5.zip</a> - 5.7M file SHA19c98ff3939459253011fc3f1922a4de7fd48</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.12.4 maintenance release]]></title> <link>https://jbrowse.org/blog/2018/02/14/jbrowse-1-12-4-maintenance-release-index.html</link> <guid>https://jbrowse.org/blog/2018/02/14/jbrowse-1-12-4-maintenance-release-index.html</guid> <pubDate>Wed, 14 Feb 2018 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.12.4 has been released, with a great many improvements and bugfixes! Apologies for the long delay since the last release. One highlight of this release is that we have fixed a severe incompatibility that prevented many of the JBrowse forma ]]></description> </item> <item> <title><![CDATA[JBrowse-1.12.3: Maintenance Release]]></title> <link>https://jbrowse.org/blog/2017/05/02/jbrowse-1-12-3-index.html</link> <guid>https://jbrowse.org/blog/2017/05/02/jbrowse-1-12-3-index.html</guid> <pubDate>Tue, 02 May 2017 06:00:00 GMT</pubDate> <description><![CDATA[**We are happy to announce JBrowse 1.12.3 release! ** This release includes a lot of improvements and bugfixes and we thank the community for the support. Some great new features include parsers for new file formats including 2bit format, which can ]]></description> </item> <item> <title><![CDATA[GSoC Students Do Cool JBrowse Projects]]></title> <link>https://jbrowse.org/blog/2016/06/03/gsoc-students-do-cool-jbrowse-projects-index.html</link> <guid>https://jbrowse.org/blog/2016/06/03/gsoc-students-do-cool-jbrowse-projects-index.html</guid> <pubDate>Fri, 03 Jun 2016 06:00:00 GMT</pubDate> <description><![CDATA[<div>I'm pleased to introduce two Google Summer of Code students who are working actively on Jbrowse projects:</div> <div> <h1><a class="anchor" aria-hidden="true" id="span-style-font-size-small-pubudu-dodangoda-span-span-style-font-size-small-is-working-on-a-social-commentin"></a><a href="#span-style-font-size-small-pubudu-dodangoda-span-span-style-font-size-small-is-working-on-a-social-commentin" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Pubudu Dodangoda is working on a social commentin</h1> ]]></description> </item> <item> <title><![CDATA[JBrowse-1.12.1: Maintenance Release]]></title> <link>https://jbrowse.org/blog/2016/03/01/jbrowse-1-12-1-index.html</link> <guid>https://jbrowse.org/blog/2016/03/01/jbrowse-1-12-1-index.html</guid> <pubDate>Tue, 01 Mar 2016 06:00:00 GMT</pubDate> <description><![CDATA[We are happy to announce JBrowse 1.12.1 release! This is a maintenance release. <ul> <li><a href="http://jbrowse.org/releases/JBrowse-1.12.1.zip">JBrowse-1.12.1.zip</a> - 4.9M file SHA1 bb917733f768744d703ab7b17b1f80040c055a78</li> <li>[JBrowse-1.12.1-dev.zip](http://</li> </ul> ]]></description> </item> <item> <title><![CDATA[State of the Browser, 2016]]></title> <link>https://jbrowse.org/blog/2016/02/25/state-of-the-browser-2016-index.html</link> <guid>https://jbrowse.org/blog/2016/02/25/state-of-the-browser-2016-index.html</guid> <pubDate>Thu, 25 Feb 2016 06:00:00 GMT</pubDate> <description><![CDATA[It's been a while since we posted on here<a href="#asterisk">*</a>, and while the JBrowse-o-sphere has not been silent (there's been plenty of chatter on the <a href="https://lists.sourceforge.net/lists/listinfo/gmod-ajax">gmod-ajax</a> mailing list and the GitHub [issues ]]></description> </item> <item> <title><![CDATA[JBrowse-1.12.0: Open new genome from FASTA, in-line refseqs, NeatFeatures, Desktop]]></title> <link>https://jbrowse.org/blog/2015/12/17/jbrowse-1-12-0-index.html</link> <guid>https://jbrowse.org/blog/2015/12/17/jbrowse-1-12-0-index.html</guid> <pubDate>Thu, 17 Dec 2015 06:00:00 GMT</pubDate> <description><![CDATA[We are happy to announce JBrowse 1.12.0 release! This new release includes some exciting new features including the ability to load new genomes from FASTA and indexed FASTA formats; in-line refseqs, and server-free desktop applications for Windows an ]]></description> </item> <item> <title><![CDATA[JBrowse-1.11.6 maintenance release]]></title> <link>https://jbrowse.org/blog/2015/02/12/jbrowse-1-11-6-index.html</link> <guid>https://jbrowse.org/blog/2015/02/12/jbrowse-1-11-6-index.html</guid> <pubDate>Thu, 12 Feb 2015 06:00:00 GMT</pubDate> <description><![CDATA[I'm pleased to announce JBrowse 1.11.6 is now available! Everybody's feedback, bug reports, pull requests, and feature requests have been invaluable for making this happen. This release includes new UI options for easily setting "Log scale" on wiggle ]]></description> </item> <item> <title><![CDATA[JBrowse-1.11.5 maintenance release]]></title> <link>https://jbrowse.org/blog/2014/09/04/jbrowse-1-11-5-index.html</link> <guid>https://jbrowse.org/blog/2014/09/04/jbrowse-1-11-5-index.html</guid> <pubDate>Thu, 04 Sep 2014 06:00:00 GMT</pubDate> <description><![CDATA[A new JBrowse release has arrived! JBrowse 1.11.5 incorporates many valuable contributions and feedback from the community which has been overwhelmingly positive. Some notable bugs have been fixed, including a long-standing VCF file parsing bug, a sc ]]></description> </item> <item> <title><![CDATA[JBrowse-1.11.4 maintenance release]]></title> <link>https://jbrowse.org/blog/2014/05/14/jbrowse-1-11-4-maintenance-release-index.html</link> <guid>https://jbrowse.org/blog/2014/05/14/jbrowse-1-11-4-maintenance-release-index.html</guid> <pubDate>Wed, 14 May 2014 06:00:00 GMT</pubDate> <description><![CDATA[I am happy to announce the release of JBrowse 1.11.4. This is the first release after Rob's leave, and it represents the great community effort to keep things going. There are some exciting new developments in this version, including high-resolution ]]></description> </item> <item> <title><![CDATA[JBrowse 1.11.3 maintenance release]]></title> <link>https://jbrowse.org/blog/2014/03/07/jbrowse-1-11-3-index.html</link> <guid>https://jbrowse.org/blog/2014/03/07/jbrowse-1-11-3-index.html</guid> <pubDate>Fri, 07 Mar 2014 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.11.3 has been released, with quite a few improvements and bugfixes, including a new coloring scheme for BAM alignment tracks (Alignments2 tracks), a fix for some annoying bugs with the feature arrowheads, and some nice new configuration var ]]></description> </item> <item> <title><![CDATA[Tutorial: exploring structural variation using JBrowse, from the tomato 150+ re-seq project]]></title> <link>https://jbrowse.org/blog/2014/02/12/tutorial-exploring-structural-variation-index.html</link> <guid>https://jbrowse.org/blog/2014/02/12/tutorial-exploring-structural-variation-index.html</guid> <pubDate>Wed, 12 Feb 2014 06:00:00 GMT</pubDate> <description><![CDATA[We recently used JBrowse in the 150 Tomato Genome ReSequencing project, and it worked great! The aim of the 150 Tomato Genome ReSequencing project (<a href="http://www.tomatogenome.net">http://www.tomatogenome.net</a>) is to reveal and explore the genetic vari ]]></description> </item> <item> <title><![CDATA[JBrowse 1.11.2 maintenance release]]></title> <link>https://jbrowse.org/blog/2014/02/10/jbrowse-1-11-2-index.html</link> <guid>https://jbrowse.org/blog/2014/02/10/jbrowse-1-11-2-index.html</guid> <pubDate>Mon, 10 Feb 2014 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.11.2 has been released, with some new controls to adjust the size of quantitative tracks (thanks to Evan Briones at University of Arizona!), added support for the new text-based <code>tracks.conf</code> files to <code>generate-names.pl</code>, and quite a few ot ]]></description> </item> <item> <title><![CDATA[JBrowse 1.11.1 maintenance release]]></title> <link>https://jbrowse.org/blog/2014/01/07/jbrowse-1-11-1-index.html</link> <guid>https://jbrowse.org/blog/2014/01/07/jbrowse-1-11-1-index.html</guid> <pubDate>Tue, 07 Jan 2014 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.11.1 has been released, with a number of bug fixes and some nice improvements to Alignments2 tracks. Most of the Alignments2 improvements were thought up by Keiran Raine at Sanger, thanks Keiran! Thanks also to Cris Lawrence and Richard H ]]></description> </item> <item> <title><![CDATA[JBrowse 1.11.0: hierarchical track selector, easier configuration, summary mode]]></title> <link>https://jbrowse.org/blog/2013/12/19/jbrowse-1-11-0-index.html</link> <guid>https://jbrowse.org/blog/2013/12/19/jbrowse-1-11-0-index.html</guid> <pubDate>Thu, 19 Dec 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.11.0 is out today, with some major new features, and, as always, quite a lot of smaller bugfixes and improvements. But first, the download links: <ul> <li>[JBrowse-1.11.0.zip](/wordpress/wp-content/plugins/download-monitor/download.php?id=87 "</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.12 maintenance release (please upgrade!)]]></title> <link>https://jbrowse.org/blog/2013/12/10/jbrowse-1-10-12-index.html</link> <guid>https://jbrowse.org/blog/2013/12/10/jbrowse-1-10-12-index.html</guid> <pubDate>Tue, 10 Dec 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.12 has been released, and we are asking all users of JBrowse <del>1.10.7</del> 1.10.10 and higher to please upgrade to this release as soon as possible. The story behind this is a bit embarassing: I discovered today that JBrowse rel ]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.11 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/12/03/jbrowse-1-10-11-index.html</link> <guid>https://jbrowse.org/blog/2013/12/03/jbrowse-1-10-11-index.html</guid> <pubDate>Tue, 03 Dec 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.11 has been released, with many bug fixes and better support for spliced alignments in SNPCoverage tracks. <div style="padding: 2em 1em; margin: 1em; border: 1px solid #eee; background: #fcfcfc">(Download disabled. Please download the[]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.10 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/11/21/jbrowse-1-10-10-index.html</link> <guid>https://jbrowse.org/blog/2013/11/21/jbrowse-1-10-10-index.html</guid> <pubDate>Thu, 21 Nov 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.10 has been released, with new compression support in <code>generate-names.pl</code>, configurable inter-track spacing, and quite a few bug fixes. <div style="padding: 2em 1em; margin: 1em; border: 1px solid #eee; background: #fcfcfc">(Download di]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.9 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/11/08/jbrowse-1-10-9-index.html</link> <guid>https://jbrowse.org/blog/2013/11/08/jbrowse-1-10-9-index.html</guid> <pubDate>Fri, 08 Nov 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.9 has been released, with new incremental-updating support in <code>generate-names.pl</code>, along with some other bug fixes and small improvements. Files for download: <ul> <li>[JBrowse-1.10.9.zip](/wordpress/wp-content/plugins/download-monitor/down</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.8 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/10/25/jbrowse-1-10-8-index.html</link> <guid>https://jbrowse.org/blog/2013/10/25/jbrowse-1-10-8-index.html</guid> <pubDate>Fri, 25 Oct 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.8 has been released, with an important bugfix for generate-names.pl, better REST data store feature caching, and more. Files for download: <ul> <li>[JBrowse-1.10.8.zip](/wordpress/wp-content/plugins/download-monitor/download.php?id=77 "down</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.7 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/10/15/jbrowse-1-10-7-index.html</link> <guid>https://jbrowse.org/blog/2013/10/15/jbrowse-1-10-7-index.html</guid> <pubDate>Tue, 15 Oct 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.7 has been released, with some important bug fixes and added support for displaying feature density histograms from REST stores. Files for download: <ul> <li>[JBrowse-1.10.7.zip](/wordpress/wp-content/plugins/download-monitor/download.php?i</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.6 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/10/07/jbrowse-1-10-6-index.html</link> <guid>https://jbrowse.org/blog/2013/10/07/jbrowse-1-10-6-index.html</guid> <pubDate>Mon, 07 Oct 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.6 has been released, with some important bug fixes. Files for download: <ul> <li><a href="/wordpress/wp-content/plugins/download-monitor/download.php?id=73" title="download JBrowse-1.10.6.zip">JBrowse-1.10.6.zip</a> - 4.6M file SHA1 8ea2757703a83e038fb4a733</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.5 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/10/03/jbrowse-1-10-5-index.html</link> <guid>https://jbrowse.org/blog/2013/10/03/jbrowse-1-10-5-index.html</guid> <pubDate>Thu, 03 Oct 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.5 has been released, with some important bug fixes and more performance improvements for data formatting scripts. Files for download: <ul> <li>[JBrowse-1.10.5.zip](/wordpress/wp-content/plugins/download-monitor/download.php?id=71 "download</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.4 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/09/23/jbrowse-1-10-4-index.html</link> <guid>https://jbrowse.org/blog/2013/09/23/jbrowse-1-10-4-index.html</guid> <pubDate>Mon, 23 Sep 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.4 has been released, with a new simple sequence-search track tool, large performance improvements for <code>generate-names.pl</code>, and some new filtering options for VCF-based variant tracks. Files for download: <ul> <li>[JBrowse-1.10.4.zip](/wordp</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.3 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/09/04/jbrowse-1-10-3-index.html</link> <guid>https://jbrowse.org/blog/2013/09/04/jbrowse-1-10-3-index.html</guid> <pubDate>Wed, 04 Sep 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.3 has been released, with a lot of small enhancements and important bugfixes. Files for download: <ul> <li><a href="/wordpress/wp-content/plugins/download-monitor/download.php?id=67" title="download JBrowse-1.10.3.zip">JBrowse-1.10.3.zip</a> - 4.8M file SHA</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.2 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/08/15/jbrowse-1-10-2-index.html</link> <guid>https://jbrowse.org/blog/2013/08/15/jbrowse-1-10-2-index.html</guid> <pubDate>Thu, 15 Aug 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.2 has been released, with fixes for some minor issues, and some minor improvements to the CanvasFeatures track. Files for download: <ul> <li>[JBrowse-1.10.2.zip](/wordpress/wp-content/plugins/download-monitor/download.php?id=65 "download JB</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.1 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/08/06/jbrowse-1-10-1-maintenance-release-index.html</link> <guid>https://jbrowse.org/blog/2013/08/06/jbrowse-1-10-1-maintenance-release-index.html</guid> <pubDate>Tue, 06 Aug 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.10.1 has been released, with fixes for some minor issues and one major issue. Files for download: <ul> <li><a href="/wordpress/wp-content/plugins/download-monitor/download.php?id=63" title="download JBrowse-1.10.1.zip">JBrowse-1.10.1.zip</a> - 5.2M file SHA1 3</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.10.0: Combination tracks, better feature tracks, more glyphs, SPARQL support, and track pinning!]]></title> <link>https://jbrowse.org/blog/2013/07/30/jbrowse-1-10-0-index.html</link> <guid>https://jbrowse.org/blog/2013/07/30/jbrowse-1-10-0-index.html</guid> <pubDate>Tue, 30 Jul 2013 06:00:00 GMT</pubDate> <description><![CDATA[After a long, hard development push, JBrowse 1.10.0 is out today! There are several major improvements in this release, and a huge number of smaller improvements and bugfixes. <h3><a class="anchor" aria-hidden="true" id="download-links"></a><a href="#download-links" aria-hidden="true" class="hash-link"><svg class="hash-link-icon" aria-hidden="true" height="16" version="1.1" viewBox="0 0 16 16" width="16"><path fill-rule="evenodd" d="M4 9h1v1H4c-1.5 0-3-1.69-3-3.5S2.55 3 4 3h4c1.45 0 3 1.69 3 3.5 0 1.41-.91 2.72-2 3.25V8.59c.58-.45 1-1.27 1-2.09C10 5.22 8.98 4 8 4H4c-.98 0-2 1.22-2 2.5S3 9 4 9zm9-3h-1v1h1c1 0 2 1.22 2 2.5S13.98 12 13 12H9c-.98 0-2-1.22-2-2.5 0-.83.42-1.64 1-2.09V6.25c-1.09.53-2 1.84-2 3.25C6 11.31 7.55 13 9 13h4c1.45 0 3-1.69 3-3.5S14.5 6 13 6z"></path></svg></a>Download links</h3> <ul> <li>[JBrowse-1.10.0.zip](/wordpress/wp-content/p</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.9.8 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/07/05/jbrowse-1-9-8-index.html</link> <guid>https://jbrowse.org/blog/2013/07/05/jbrowse-1-9-8-index.html</guid> <pubDate>Fri, 05 Jul 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.9.8 has been released, with fixes for some minor issues, a performance improvement when many HTML-based tracks are open, and a new <code>yScalePosition</code> configuration option for all tracks can can be set to "left", "right", or "center" to change ]]></description> </item> <item> <title><![CDATA[About JBrowse version numbers]]></title> <link>https://jbrowse.org/blog/2013/07/02/about-jbrowse-version-numbers-index.html</link> <guid>https://jbrowse.org/blog/2013/07/02/about-jbrowse-version-numbers-index.html</guid> <pubDate>Tue, 02 Jul 2013 06:00:00 GMT</pubDate> <description><![CDATA[Just so everybody's on the same page, I thought I should point out that from 1.2.0 onward, JBrowse version numbers follow a predictable scheme that encodes a bit of information about what is contained in a release. JBrowse version numbers look like ]]></description> </item> <item> <title><![CDATA[JBrowse 1.9.7 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/06/25/jbrowse-1-9-7-maintenance-release-index.html</link> <guid>https://jbrowse.org/blog/2013/06/25/jbrowse-1-9-7-maintenance-release-index.html</guid> <pubDate>Tue, 25 Jun 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.9.7 has been released, with an important fix for a race condition that intermittently causes some NCList-based tracks to show the wrong genomic region when the browser is first started, and a fix for a bug in how JBrowse plugin paths are ca ]]></description> </item> <item> <title><![CDATA[JBrowse 1.9.6 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/06/18/jbrowse-1-9-6-maintenance-release-index.html</link> <guid>https://jbrowse.org/blog/2013/06/18/jbrowse-1-9-6-maintenance-release-index.html</guid> <pubDate>Tue, 18 Jun 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.9.6 has been released, with a few more bug fixes and a new <code>--workdir</code> option for <code>generate-names.pl</code>. Files for download: <ul> <li>[JBrowse-1.9.6.zip](/wordpress/wp-content/plugins/download-monitor/download.php?id=55 "download JBrowse-1.9.6.z</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.9.5 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/06/12/jbrowse-1-9-5-index.html</link> <guid>https://jbrowse.org/blog/2013/06/12/jbrowse-1-9-5-index.html</guid> <pubDate>Wed, 12 Jun 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.9.5 has been released, with some small new features, and fixes for many small issues. Files for download: <ul> <li><a href="/wordpress/wp-content/plugins/download-monitor/download.php?id=53" title="download JBrowse-1.9.5.zip">JBrowse-1.9.5.zip</a> - 5.1M file</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.9.4 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/05/22/jbrowse-1-9-4-index.html</link> <guid>https://jbrowse.org/blog/2013/05/22/jbrowse-1-9-4-index.html</guid> <pubDate>Wed, 22 May 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.9.4 has been released, with fixes for a number of smaller issues present in the 1.9.3 release. Files for download: <ul> <li><a href="/wordpress/wp-content/plugins/download-monitor/download.php?id=51" title="download JBrowse-1.9.4.zip">JBrowse-1.9.4.zip</a> - 5</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.9.3 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/05/09/jbrowse-1-9-3-index.html</link> <guid>https://jbrowse.org/blog/2013/05/09/jbrowse-1-9-3-index.html</guid> <pubDate>Thu, 09 May 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.9.3 has been released, with fixes for a number of smaller issues present in the 1.9.2 release. Files for download: <ul> <li><a href="/wordpress/wp-content/plugins/download-monitor/download.php?id=49" title="download JBrowse-1.9.3.zip">JBrowse-1.9.3.zip</a> - 5</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.9.2 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/05/02/jbrowse-1-9-2-index.html</link> <guid>https://jbrowse.org/blog/2013/05/02/jbrowse-1-9-2-index.html</guid> <pubDate>Thu, 02 May 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.9.2 has been released, with fixes for a number of smaller issues present in the 1.9.1 release. Files for download: <ul> <li><a href="/wordpress/wp-content/plugins/download-monitor/download.php?id=47" title="download JBrowse-1.9.2.zip">JBrowse-1.9.2.zip</a> - 5</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.9.1 maintenance release]]></title> <link>https://jbrowse.org/blog/2013/04/25/jbrowse-1-9-1-index.html</link> <guid>https://jbrowse.org/blog/2013/04/25/jbrowse-1-9-1-index.html</guid> <pubDate>Thu, 25 Apr 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.9.1 has been released, with performance improvements in both BAM and VCF tracks, and lots of smaller fixes and improvements. Files for download: <ul> <li>[JBrowse-1.9.1.zip](/wordpress/wp-content/plugins/download-monitor/download.php?id=45 "do</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.9.0: VCF support, dataset switching, wiggle track dynamic scaling, REST backend]]></title> <link>https://jbrowse.org/blog/2013/04/16/jbrowse-1-9-0-index.html</link> <guid>https://jbrowse.org/blog/2013/04/16/jbrowse-1-9-0-index.html</guid> <pubDate>Tue, 16 Apr 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.9.0 is out today, with some great new features, and lots of smaller improvements and bug fixes. Download links: <ul> <li><a href="/wordpress/wp-content/plugins/download-monitor/download.php?id=43" title="download JBrowse-1.9.0.zip">JBrowse-1.9.0.zip</a> -</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.8.1 bugfix release]]></title> <link>https://jbrowse.org/blog/2013/02/12/jbrowse-1-8-1-bugfix-release-index.html</link> <guid>https://jbrowse.org/blog/2013/02/12/jbrowse-1-8-1-bugfix-release-index.html</guid> <pubDate>Tue, 12 Feb 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.8.1 has been released, with several small fixes and additional features, mostly related to displaying features on peptide sequences. Files for download: <ul> <li>[JBrowse-1.8.1.zip](/wordpress/wp-content/plugins/download-monitor/download.php?i</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.8.0: opens local files, new BAM track types, new plugin system]]></title> <link>https://jbrowse.org/blog/2013/01/31/jbrowse-1-8-0-index.html</link> <guid>https://jbrowse.org/blog/2013/01/31/jbrowse-1-8-0-index.html</guid> <pubDate>Thu, 31 Jan 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.8.0 is finally here, with some great new features, and lots of smaller improvements. Download links: <ul> <li><a href="/wordpress/wp-content/plugins/download-monitor/download.php?id=39" title="download JBrowse-1.8.0.zip">JBrowse-1.8.0.zip</a> - 3.3M - Includes</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.7.6 bugfix release]]></title> <link>https://jbrowse.org/blog/2013/01/10/jbrowse-1-7-6-bugfix-release-index.html</link> <guid>https://jbrowse.org/blog/2013/01/10/jbrowse-1-7-6-bugfix-release-index.html</guid> <pubDate>Thu, 10 Jan 2013 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.7.6 has been released, containing a fix for yet another bug that prevented display of certain kinds of BAM files. The rate of bug reports for BAM support is tailing off, and it's starting to look pretty solid. Thanks to everyone who has h ]]></description> </item> <item> <title><![CDATA[JBrowse 1.7.5 bugfix release]]></title> <link>https://jbrowse.org/blog/2012/12/12/jbrowse-1-7-5-bugfix-release-index.html</link> <guid>https://jbrowse.org/blog/2012/12/12/jbrowse-1-7-5-bugfix-release-index.html</guid> <pubDate>Wed, 12 Dec 2012 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.7.5 has been released, containing fixes for some more issues found in the <a href="http://jbrowse.org/jbrowse-1-7-4-bugfix-release/" title="JBrowse 1.7.4 bugfix release">1.7.4 release</a> and earlier releases in the 1.7.x series. Files for download: <ul> <li>[</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.7.4 bugfix release]]></title> <link>https://jbrowse.org/blog/2012/12/06/jbrowse-1-7-4-bugfix-release-index.html</link> <guid>https://jbrowse.org/blog/2012/12/06/jbrowse-1-7-4-bugfix-release-index.html</guid> <pubDate>Thu, 06 Dec 2012 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.7.4 has been released, containing fixes for some more issues found in the <a href="http://jbrowse.org/jbrowse-1-7-3-bugfix-release/" title="JBrowse 1.7.3 bugfix release">1.7.3 release</a> and earlier. In particular, several bad bugs have been fixed in supp ]]></description> </item> <item> <title><![CDATA[JBrowse 1.7.3 bugfix release]]></title> <link>https://jbrowse.org/blog/2012/11/28/jbrowse-1-7-3-bugfix-release-index.html</link> <guid>https://jbrowse.org/blog/2012/11/28/jbrowse-1-7-3-bugfix-release-index.html</guid> <pubDate>Wed, 28 Nov 2012 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.7.3 has been released, containing fixes for some more issues found in the <a href="http://jbrowse.org/jbrowse-1-7-2-bugfix-release/" title="JBrowse 1.7.2 bugfix release">1.7.2 release</a> and earlier. Remote BAM access is rather difficult to get right, tha ]]></description> </item> <item> <title><![CDATA[JBrowse 1.7.2 bugfix release]]></title> <link>https://jbrowse.org/blog/2012/11/09/jbrowse-1-7-2-bugfix-release-index.html</link> <guid>https://jbrowse.org/blog/2012/11/09/jbrowse-1-7-2-bugfix-release-index.html</guid> <pubDate>Fri, 09 Nov 2012 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.7.2 has been released, containing a fix for some further BAM issues found in the <a href="http://jbrowse.org/jbrowse-1-7-1-bugfix-release/" title="JBrowse 1.7.1 bugfix release">1.7.1 release</a>. Thanks so much to everyone who has worked with me to isolate ]]></description> </item> <item> <title><![CDATA[JBrowse 1.7.1 bugfix release]]></title> <link>https://jbrowse.org/blog/2012/11/07/jbrowse-1-7-1-bugfix-release-index.html</link> <guid>https://jbrowse.org/blog/2012/11/07/jbrowse-1-7-1-bugfix-release-index.html</guid> <pubDate>Wed, 07 Nov 2012 06:00:00 GMT</pubDate> <description><![CDATA[JBrowse 1.7.1 has been released, containing fixes for some issues in the <a href="http://jbrowse.org/jbrowse-1-7-0/" title="JBrowse 1.7.0, now with data export, direct BAM display, and much more">1.7.0 release</a>. Files for download: <ul> <li>[JBrowse-1.7.1.zip](/wordp</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.7.0, now with data export, direct BAM display, and much more]]></title> <link>https://jbrowse.org/blog/2012/11/05/jbrowse-1-7-0-index.html</link> <guid>https://jbrowse.org/blog/2012/11/05/jbrowse-1-7-0-index.html</guid> <pubDate>Mon, 05 Nov 2012 06:00:00 GMT</pubDate> <description><![CDATA[I am pleased to announce the release of JBrowse 1.7.0, which includes a great many enhancements both large and small. Very exciting! First, the download links: <ul> <li>[JBrowse-1.7.0.zip](/wordpress/wp-content/plugins/download-monitor/download.php?id=</li> </ul> ]]></description> </item> <item> <title><![CDATA[JBrowse 1.6.5 bugfix release]]></title> <link>https://jbrowse.org/blog/2012/10/26/jbrowse-1-6-5-bugfix-release-index.html</link> <guid>https://jbrowse.org/blog/2012/10/26/jbrowse-1-6-5-bugfix-release-index.html</guid> <pubDate>Fri, 26 Oct 2012 06:00:00 GMT</pubDate> <description><![CDATA[I'm pleased to announce the release of JBrowse 1.6.5, containing some small new features, plus fixes for some issues in the [1.6.4 release](<a href="http://jbrowse.org/jbrowse-1-6-4-bugfix-release/">http://jbrowse.org/jbrowse-1-6-4-bugfix-release/</a> "JBrowse 1.6.4 bugfix is also coming along very soon, with a ]]></description> </item> <item> <title><![CDATA[JBrowse 1.6.4 bugfix release]]></title> <link>https://jbrowse.org/blog/2012/10/16/jb