@gmod/jbrowse/website/blog/2019-01-31-jbrowse-1-16-2.md

JBrowse - client-side genome browser

---
layout: post
title: JBrowse 1.16.2 maintenance release
date: 2019-01-31
tags: ["News","Software releases"]
---

I'm happy to announce the release of 1.16.2, it is a smaller maintenance release. It contains several fixes including for CSI in BAM files,
and several other small fixes. Thanks to everyone for communicating requests and bug reports

*   [JBrowse-1.16.2.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.2-release/JBrowse-1.16.2.zip) - minified release
*   [JBrowse-1.16.2-dev.zip](https://github.com/GMOD/jbrowse/archive/1.16.2-release.zip) - use this if you modify jbrowse source code or use plugins
*   [JBrowse-1.16.2-desktop-win32-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.2-release/JBrowse-1.16.2-desktop-win32-x64.zip)
*   [JBrowse-1.16.2-desktop-linux-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.2-release/JBrowse-1.16.2-desktop-linux-x64.zip)
*   [JBrowse-1.16.2-desktop-darwin-x64.zip](https://github.com/GMOD/jbrowse/releases/download/1.16.2-release/JBrowse-1.16.2-desktop-darwin-x64.zip)




## Minor improvements

 * Allow configuring the cache busting behavior for adding random ?v= value
   to config file requests. This can be configured in index.html. Thanks to
   user <a href="https://github.com/sandilyaamit">@sandilyaamit</a> for reporting, this is actually important to disable
   when using Amazon presigned URLs (<a href="https://github.com/cmdcolin">@cmdcolin</a>)

 * Adds `fixBounds` config for XYPlot tracks which can be set to false to
   disable the behavior of rounding up or down on the min_score/max_score
   variables for the ruler. Thanks to <a href="https://github.com/scottcain">@scottcain</a> for the suggestion
   (<a href="https://github.com/gmod/jbrowse/pull/1306">issue #1306</a>, <a href="https://github.com/cmdcolin">@cmdcolin</a>)

## Bug fixes

 * Fix ability to use CSI indexes with BAM files since 1.16.0 (<a href="https://github.com/cmdcolin">@cmdcolin</a>)

 * Fix ability to read some CRAM files with unmapped mates (<a href="https://github.com/cmdcolin">@cmdcolin</a>)

 * Fix issue with the browser loading NaN locations on startup (<a href="https://github.com/cmdcolin">@cmdcolin</a>)

 * Add fix for exporting GFF3 for newer browsers that have Array.values()
   enabled. Thanks to Scott Cain for reporting (<a href="https://github.com/cmdcolin">@cmdcolin</a>)

 * Improve error message when refSeqs=file.fai config fails to load
   (<a href="https://github.com/cmdcolin">@cmdcolin</a>)