@gmod/jbrowse/utils/jb_run.js

JBrowse - client-side genome browser

#!/usr/bin/env node

/* express server for jbrowse
 * (this script gets copied to the app root directory upon npm install)
 */

var express = require('express');
var getopt = require('node-getopt');
var fs = require("fs-extra");

var thisPath = process.cwd();
var jbrowsePath = "./";

// check if jbrowse is a module
if (fs.pathExistsSync(thisPath+"/node_modules/@gmod/jbrowse/utils")) {
	jbrowsePath = "./node_modules/@gmod/jbrowse";
}

// command line options
var getopt = new getopt([
    ['p', 'port=NUMBER' , 'listening port'],
    ['s', 'suburi=STRING', 'sub-URI path'],
    ['h', 'help', 'display this help']
]);              // create Getopt instance
getopt.bindHelp();     // bind option 'help' to default action
opt = getopt.parseSystem(); // parse command line

var port = 3000;
var setPort = opt.options['port'];
if (typeof setPort !== 'undefined') {
    port = setPort;
}

// start the server
var app = express();

var dispPort = "";
if (port !== 80) dispPort = ":"+port;


app.use('/'+(opt.options['suburi']||''), express.static(
    jbrowsePath,
    {
        // set Content-Encoding: gzip on .jsonz and .gz files
        setHeaders(res,path,stat) {
            if( /\.(txt|json|g)z$/.test(path) && ! res.req.headers.range ) {
                res.setHeader('Content-Encoding','gzip');
            }
            res.setHeader('Cache-Control', 'public')
        }
    }
));

app.listen(port, function () {
    console.log('JBrowse is running on port %s',port);
    console.log('Point your browser to http://localhost%s',dispPort);
});