@gmod/jbrowse/tests/data/conf/tracks.conf

JBrowse - client-side genome browser

blamblam = 422

[ tracks . volvox_vcf_test ]
storeClass = JBrowse/Store/SeqFeature/VCFTabix
urlTemplate = volvox.test.vcf.gz
category = VCF
type = JBrowse/View/Track/CanvasVariants
key = VCF - additional test data
[ tracks . volvox-sorted-vcf ]
hooks.modify = function( track, feature, div ) { div.style.backgroundColor = track.config.variantIsHeterozygous(feature) ? 'red' : 'blue'; }
key = VCF - volvox-sorted variants
variantIsHeterozygous = function( feature ) { var genotypes = feature.get('genotypes');  for( var sampleName in genotypes ) { try { var gtString = genotypes[sampleName].GT.values[0]; if( ! /^1([\|\/]1)*$/.test( gtString) && ! /^0([\|\/]0)*$/.test( gtString ) ) return true; } catch(e) {} } return false; }
storeClass = JBrowse/Store/SeqFeature/VCFTabix
urlTemplate = volvox.filtered.vcf.gz
type = JBrowse/View/Track/HTMLVariants
metadata.category = VCF
metadata.Description = Variants called from volvox-sorted.bam using samtools and bcftools.  Heterozygous variants are shown in red, homozygous variants in blue.

[GENERAL]

noooj = 1