@gmod/jbrowse/src/JBrowse/View/Export/bedGraph.js

JBrowse - client-side genome browser

define([ 'dojo/_base/declare',
         'dojo/_base/array',
         'JBrowse/View/Export/BED'
       ],
       function( declare, array, bedExport ) {

return declare( bedExport,
 /**
  * @lends JBrowse.View.Export.bedGraph.prototype
  */
{
    /**
     * Data export driver for bedGraph format.
     * @constructs
     */
    constructor: function( args ) {},

    _printHeader: function() {
        // print the track definition
        this.print( 'track type=bedGraph' );
        if( this.track ) {
            if( this.track.name )
                this.print(' name="'+this.track.name+'"');
            var metadata = this.track.getMetadata();
            if( metadata.key )
                this.print(' description="'+metadata.key+'"');
        }
        this.print("\n");
    },

    formatFeature: function( f ) {
        return [
            f.get('seq_id')||this.refSeq.name,
            f.get('start'),
            f.get('end'),
            f.get('score')
        ].join("\t")+"\n";
    }
});
});