@gmod/jbrowse/src/JBrowse/Model/FileBlob.js

JBrowse - client-side genome browser

define([
           'dojo/_base/declare',
           'dojo/_base/array',
           'dojo/has',
           'JBrowse/Util/TextIterator'
       ],
       function( declare, array, has, TextIterator ) {
var FileBlob = declare( null,
/**
 * @lends JBrowse.Model.FileBlob.prototype
 */
{

    /**
     * Blob of binary data fetched from a local file (with FileReader).
     *
     * Adapted by Robert Buels from the BlobFetchable object in the
     * Dalliance Genome Explorer, which is copyright Thomas Down
     * 2006-2011.
     * @constructs
     */
    constructor: function(b) {
        this.blob = b;
        this.size = b.size;
        this.totalSize = b.size;
    },

    slice: function(start, length) {
        var sliceFunc = this.blob.mozSlice || this.blob.slice || this.blob.webkitSlice;
        return new FileBlob(
            length ? sliceFunc.call( this.blob, start, start + length )
                   : sliceFunc.call( this.blob, start )
        );
    },

    fetchLines: function( lineCallback, endCallback, failCallback ) {
        var thisB = this;
        this.fetch( function( data ) {
                        data = new Uint8Array(data);

                        var lineIterator = new TextIterator.FromBytes(
                            { bytes: data,
                              // only return a partial line at the end
                              // if we are not operating on a slice of
                              // the file
                              returnPartialRecord: !this.end
                            });
                        var line;
                        while(( line = lineIterator.getline() )) {
                                lineCallback( line );
                        }

                        endCallback();
             }, failCallback );
    },

    readLines: function( offset=0, length, lineCallback, endCallback, failCallback ) {
        var start = this.start + offset,
            end   = start + length;
        var skipFirst = offset != 0;
        this.slice( offset, length )
            .fetchLines(
                function() {
                    // skip the first line if we have a
                    // nonzero offset, because it is probably
                    // incomplete
                    if( ! skipFirst )
                        lineCallback();
                    skipFirst = false;
                }, endCallback, failCallback );
    },

    read: function( offset=0, length, callback, failCallback ) {
        var start = this.start + offset,
            end = start + length;

        // short-circuit a read of 0 bytes here, because browsers
        // actually sometimes crash if you try to read 0 bytes from
        // a local file!
        if (!length) {
            callback(new ArrayBuffer())
            return
        }

        this.slice( offset, length )
            .fetch( callback, failCallback );
    },

    readBufferPromise(offset,length) {
        return new Promise((resolve,reject) => {
            this.read(offset, length, data => {
                resolve(window.Buffer.from(data))
            }, reject)
        })
    },

    fetch: function( callback, failCallback ) {
        try {
            const reader = new FileReader()
            reader.onloadend = ev => {
                callback( reader.result )
            }
            reader.onerror = failCallback
            reader.readAsArrayBuffer(this.blob)
        } catch(e) { failCallback(e) }
    },

    fetchBufferPromise() {
        return new Promise((resolve,reject) => {
            this.fetch(data => {
                resolve(window.Buffer.from(data))
            }, reject)
        })
    },

    stat(callback,failCallback) {
        this.statPromise().then(callback, failCallback)
    },

    async statPromise() {
        return { size: this.blob.size }
    }

});
return FileBlob;
});