@gmod/jbrowse/sample_data/raw/yeast_genbank.json

JBrowse - client-side genome browser

{
  "description": "S. cerevisiae Chromosome 1",
  "db_adaptor": "Bio::DB::SeqFeature::Store",
  "db_args": { "-adaptor": "memory",
               "-dsn": "sample_data/raw/yeast_gbk/NC_001133.gbk.gff" },

  "TRACK DEFAULTS": {
    "class": "feature",
    "autocomplete": "all"
  },

  "tracks": [
    {
      "track": "repeat_region",
      "key": "Repeat Region",
      "feature": ["repeat_region"],
      "class": "feature"
    },
    {
      "track": "gene",
      "feature": ["gene"],
      "class": "feature2",
      "key": "Gene"
    },
    {
      "track": "origin_of_replication",
      "feature": ["origin_of_replication"],
      "class": "dblhelix",
      "key": "Origin of Replication"
    },
    {
      "track": "mRNA",
      "feature": ["mRNA"],
      "class": "transcript",
      "subfeatures": true,
      "subfeature_classes": {
        "CDS": "transcript-CDS",
        "UTR": "transcript-UTR"
      },
      "arrowheadClass": "transcript-arrowhead",
      "key": "mRNA"
    },
    {
      "track": "long_terminal_repeat",
      "feature": ["long_terminal_repeat"],
      "class": "feature5",
      "key": "Long Terminal Repeat"
    },
    {
      "track": "ncRNA",
      "feature": ["ncRNA"],
      "class": "feature3",
      "key": "ncRNA"
    },
    {
      "track": "pseudogene",
      "feature": ["pseudogene"],
      "class": "feature",
      "key": "Pseudogene"
    },
    {
      "track": "region",
      "feature": ["region"],
      "class": "feature5",
      "key": "Region"
    },
    {
      "track": "tRNA",
      "feature": ["tRNA"],
      "class": "feature3",
      "key": "tRNA"
    }
  ]
}