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JBrowse - client-side genome browser

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{ "description": "D. melanogaster (release 5.15)", "db_adaptor": "Bio::DB::SeqFeature::Store", "db_args": { "-dsn": "dbi:mysql:dmel_5_15" }, "TRACK DEFAULTS": { "class": "feature" }, "tracks": [ { "track": "gene", "key": "Gene Span", "feature": ["gene"], "autocomplete": "all", "class": "feature2", "category": "Gene Model features", "urlTemplate": "http://flybase.org/cgi-bin/fbidq.html?{load_id}", "extraData": {"load_id": "sub {shift->attributes(\"load_id\");}"} }, { "track": "mRNA", "feature": ["mRNA"], "autocomplete": "alias", "subfeatures": true, "key": "mRNA", "class": "transcript", "subfeature_classes": { "CDS": "transcript-CDS", "five_prime_UTR": "transcript-five_prime_UTR", "three_prime_UTR": "transcript-three_prime_UTR" }, "arrowheadClass": "transcript-arrowhead", "clientConfig": { "histScale":5 }, "urlTemplate": "http://flybase.org/cgi-bin/fbidq.html?{load_id}", "extraData": {"load_id": "sub {shift->attributes(\"load_id\");}"} }, { "track": "chromosome_band", "feature": ["chromosome_band"], "autocomplete": "label", "key": "Cytological band", "class": "exon", "category": "Genomic features" }, { "track": "tRNA", "feature": ["tRNA"], "autocomplete": "all", "key": "tRNA", "class": "helix", "category": "Genomic features" }, { "track": "noncodingRNA", "feature": ["ncRNA", "snoRNA", "snRNA", "miRNA"], "autocomplete": "all", "key": "Non coding RNA", "class": "feature3", "category": "Genomic features" }, { "track": "transposable_element", "feature": ["transposable_element"], "autocomplete": "all", "key": "Natural transposon", "category": "Genomic features", "class": "dblhelix" }, { "track": "transposable_element_insertion_site", "feature": ["transposable_element_insertion_site"], "autocomplete": "all", "key": "Transgene insertion site", "class": "triangle hgred", "category": "Genomic features" }, { "track": "orthologFB", "feature": ["orthologous_to"], "key": "Ortholog (FlyBase)", "category": "Similarity: Synteny features" }, { "track": "cDNA", "feature": ["match:sim4_na_gb.dmel", "match:sim4_na_gb.tpa.dmel", "match:sim4tandem_na_gb.dmel", "match:splign_na_cDNA_ncbi"], "key": "cDNA and Aligned genomic sequences", "class": "generic_parent", "subfeatures": true, "subfeature_classes": { "match_part": "generic_part_a" }, "clientConfig": { "labelScale": 1000000 }, "category": "Genome reagents and data" }, { "track": "EST", "feature": ["match:sim4_na_dbEST.same.dmel", "match:sim4_na_dbEST.diff.dmel", "match:splign_na_dbEST_ncbi", "match:tblastx_masked_na_dbEST.insect"], "key": "EST", "class": "generic_parent", "subfeatures": true, "subfeature_classes": { "match_part": "match_part" }, "clientConfig": { "labelScale": 1000000 }, "category": "Genome reagents and data" }, { "track": "oligo", "feature": ["oligonucleotide"], "key": "Oligonucleotides", "class": "feature4", "category": "Genome reagents and data" }, { "track": "pcr_product", "feature": ["pcr_product:DGRC-1"], "key": "amplicons", "class": "feature", "category": "Genome reagents and data" }, { "track": "BAC", "feature": ["BAC_cloned_genomic_insert"], "key": "Tiling BAC", "class": "feature", "category": "Genome reagents and data" }, { "track": "protein_binding_site", "feature": ["protein_binding_site"], "key": "protein binding site", "class": "feature", "category": "Mapped features" }, { "track": "enhancer", "feature": ["enhancer"], "key": "enhancer", "class": "feature", "category": "Mapped features" }, { "track": "rescue_fragment", "feature": ["rescue_fragment"], "key": "rescue fragment", "class": "feature", "category": "Mapped features" }, { "track": "transposable_element_target_site_duplication", "feature": ["transposable_element_target_site_duplication"], "key": "transposable element target site duplication", "class": "feature", "category": "Mapped features" }, { "track": "regulatory_region", "feature": ["regulatory_region"], "key": "regulatory region", "class": "feature", "category": "Mapped features" }, { "track": "point_mutation", "feature": ["point_mutation"], "key": "Mutation: point mutation", "class": "feature", "category": "Mapped features" }, { "track": "sequence_variant", "feature": ["sequence_variant"], "key": "Mutation: sequence variant", "class": "feature", "category": "Mapped features" }, { "track": "uncharacterized_change_in_nucleotide_sequence", "feature": ["uncharacterized_change_in_nucleotide_sequence"], "key": "Mutation: uncharacterized change in nucleotide_sequence", "class": "feature", "category": "Mapped features" }, { "track": "aberration_junction", "feature": ["aberration_junction"], "key": "Mutation: aberration junction", "class": "feature", "category": "Mapped features" }, { "track": "complex_substitution", "feature": ["complex_substitution"], "key": "Mutation: complex substitution ", "class": "feature", "category": "Mapped features" }, { "track": "deletion", "feature": ["deletion"], "key": "Mutation: deletion", "class": "feature", "category": "Mapped features" }, { "track": "insertion_site", "feature": ["insertion_site"], "key": "Mutation: insertion site", "class": "feature", "category": "Mapped features" }, { "track": "breakpoint", "feature": ["breakpoint"], "key": "breakpoint", "class": "feature" }, { "track": "orthologous_region", "feature": ["orthologous_region"], "key": "orthologous_region", "class": "feature" }, { "track": "protein", "feature": ["protein"], "key": "protein", "class": "feature" }, { "track": "pseudogene", "feature": ["pseudogene"], "key": "pseudogene", "class": "feature" }, { "track": "RNAi_reagent", "feature": ["RNAi_reagent"], "key": "RNAi_reagent", "class": "feature" } ] }