@gmod/jbrowse
Version:
JBrowse - client-side genome browser
124 lines (123 loc) • 4.71 kB
YAML
sudo: true
dist: trusty
language: perl
python: 2.7.10
perl:
- '5.26'
- '5.14'
addons:
apt:
packages:
- libdb-dev
- libgd2-noxpm-dev
firefox: '58.0'
cache:
yarn: true
directories:
- extlib/
- node_modules/
- "$HOME/perl5/"
- "$HOME/python/"
- "$HOME/.nvm/"
env:
global:
- GECKODRIVER_VERSION=0.19.1
before_install:
- sudo dpkg --add-architecture i386
- sudo apt-get install wine1.6 # this is for building windows electron images
install:
- mkdir ~/geckodriver_$GECKODRIVER_VERSION;
- wget -O - https://github.com/mozilla/geckodriver/releases/download/v0.19.1/geckodriver-v$GECKODRIVER_VERSION-linux64.tar.gz | tar -xzf - -C ~/geckodriver_$GECKODRIVER_VERSION;
- export PATH=$PATH:$HOME/geckodriver_$GECKODRIVER_VERSION
- cpanm --notest GD::Image Text::Markdown DateTime JSON
# only init the python virtualenv if it did not show up in our build cache
- if [[ ! -f ~/python/bin/activate ]]; then virtualenv ~/python; fi
- source ~/python/bin/activate
- pip install nose selenium
script:
# these versions *should* already be set in version control, but set them again here just in case
- if [[ "x$TRAVIS_PULL_REQUEST_BRANCH" != "x" && $TRAVIS_BRANCH == "master" ]]; then return 1; fi
- if [[ "x$TRAVIS_TAG" != "x" ]]; then build/set_package_versions.pl $TRAVIS_TAG src/JBrowse/package.json package.json website/siteConfig.js; fi
- RELEASE_VERSION=`node -e 'require("fs").readFile("src/JBrowse/package.json", (e,d)=>console.log(JSON.parse(d).version))'`
- BUILD_DIR=$PWD
- set -e
- JBROWSE_BUILD_MIN=0 ./setup.sh
- yarn lint
- prove -Isrc/perl5 -r -j3 tests/perl_tests;
- utils/jb_run.js -p 9000 & sleep 2
- node tests/js_tests/run-puppeteer.js http://localhost:9000/tests/js_tests/index.html
- utils/jb_run.js -p 8000 -s jbrowse & sleep 2
- node tests/js_tests/run-puppeteer.js http://localhost:8000/jbrowse/tests/js_tests/index.html
- xvfb-run node_modules/.bin/ava --timeout=60s tests/electron_tests
- MOZ_HEADLESS=1 SELENIUM_BROWSER=firefox JBROWSE_URL=http://localhost:9000/index.html tests/selenium_tests/travis_wrapper.sh;
# if we are building for inclusion into the `dev` branch, build the releases and test the minimal one too
- |
if [[ "x$TRAVIS_TAG" != "x" || $TRAVIS_BRANCH = "master" || $TRAVIS_BRANCH = "dev" || $TRAVIS_PULL_REQUEST != "false" ]]; then
make -f build/Makefile;
rm -rf JBrowse-*/;
unzip -q JBrowse-$RELEASE_VERSION.zip;
cd JBrowse-$RELEASE_VERSION/;
cp -r ../tests/ .;
./setup.sh;
prove -Isrc/perl5 -r -j3 tests/perl_tests;
cd $BUILD_DIR;
MOZ_HEADLESS=1 SELENIUM_BROWSER=firefox NOSEOPTS="-I jasmine" JBROWSE_URL=http://localhost:9000/JBrowse-$RELEASE_VERSION/index.html tests/selenium_tests/travis_wrapper.sh;
# remove symlink and copy actual files to dir for upload to s3
rm JBrowse-$RELEASE_VERSION/sample_data/raw/volvox
cp -R docs/tutorial/data_files JBrowse-$RELEASE_VERSION/sample_data/raw/volvox
fi
- set +e
- website/build.sh
after_failure:
- cat setup.log
before_cache:
- rm -f node_modules/.cache
deploy:
# upload both minified and non-minified builds to GitHub releases
- provider: releases
api_key:
secure: BuOD7rqrcGKT3g0hVY5AGpJI/Kkko4DhSIYSUQ28sS2AOdoNyTD0t5doL/Kiq4BC41q198tbFFt1dnXGdo8YKpBSXO/uGUuuiGtMFHM++I84oLq20p49iyrenNZ4m/jy/Q4YtizIYLs83DVzVdQzhJ5hrTx6f+d1gc9EgaMeBF4=
file: JBrowse-1.*.zip
file_glob: true
skip_cleanup: true
on:
repo: GMOD/jbrowse
perl: 5.26
tags: true
# upload regular non-minified version to npm
- provider: npm
email: rbuels@gmail.com
skip_cleanup: true
api_key:
secure: "OpxHZGvyCFeG2CUpw4dHTz3kFBHJXeET2c4XxwKMxtL2FVt4W/zDLUV0gLQDFfsLlj+zjF62qtbHU8MajMw3aFLlTIdMIit+2s6H4D8kuBh5Q7pO5/gAykWtiwkJ3BudoYDGoDlB5kkakG4MPvvY26490hbmySCSgpsjetM91zE="
on:
repo: GMOD/jbrowse
perl: 5.26
tags: true
# upload built jbrowse to s3 bucket for demo on main site
- provider: s3
access_key_id: $AWS_ACCESS_KEY
secret_access_key: $AWS_SECRET_KEY
bucket: "jbrowse.org"
skip_cleanup: true
local-dir: JBrowse-$RELEASE_VERSION
upload-dir: code/JBrowse-$RELEASE_VERSION
cache_control: "max-age=1800"
on:
tags: true
repo: GMOD/jbrowse
perl: 5.26
condition: $TRAVIS_COMMIT_MESSAGE =~ (\[update docs\]) # add this extra condition so that it basically corresponds with the real build published and not a test tag
# upload the docusaurus website to the s3 bucket also
- provider: s3
access_key_id: $AWS_ACCESS_KEY
secret_access_key: $AWS_SECRET_KEY
bucket: "jbrowse.org"
skip_cleanup: true
local-dir: website/build/jbrowse/
cache_control: "max-age=1800"
on:
perl: 5.26
repo: GMOD/jbrowse
condition: $TRAVIS_COMMIT_MESSAGE =~ (\[update docs\])
all_branches: true