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@gmod/jbrowse

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JBrowse - client-side genome browser

jbrowse.org

GMOD/jbrowse

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--- layout: post title: JBrowse 1.9.6 maintenance release date: 2013-06-18 tags: ["Software releases"] --- JBrowse 1.9.6 has been released, with a few more bug fixes and a new `--workdir` option for `generate-names.pl`. Files for download: * [JBrowse-1.9.6.zip](/wordpress/wp-content/plugins/download-monitor/download.php?id=55 "download JBrowse-1.9.6.zip") - 5.1M file SHA1 2d09a47a57c314ed728ae49db9998a6780ad6609 * [JBrowse-1.9.6-dev.zip](http://jbrowse.org/wordpress/wp-content/plugins/download-monitor/download.php?id=56 "download JBrowse-1.9.6-dev.zip") - 26M file SHA1 115abb36a78df4307c87d02b5093f88eb8f43f28 Changes in this release: * Fixed a bug in which the reference sequence selection dropdown menu did not work for purely numeric reference sequence names. Thanks to Matt Bomhoff for pointing this out. * Fixed a bug with some types of BAM files in which not all BAM features would be displayed. Thanks to Ignazio Carbone for pointing this out. (issue #276). * Fixed bug in which File->Open failed to open GFF3 files with embedded sequences in a FASTA section. * Added a `--workdir` option to `generate-names.pl` to allow name index building on a faster filesystem than the one that will ultimately store the name index. Thanks to Alexie Papanicolaou for suggesting this. (issue #273).