UNPKG

@gmod/jbrowse

Version:

JBrowse - client-side genome browser

jbrowse.org

GMOD/jbrowse

33 lines (29 loc) • 1.65 kB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
--- layout: post title: JBrowse 1.8.1 bugfix release date: 2013-02-12 tags: ["Software releases"] --- JBrowse 1.8.1 has been released, with several small fixes and additional features, mostly related to displaying features on peptide sequences. Files for download: * [JBrowse-1.8.1.zip](/wordpress/wp-content/plugins/download-monitor/download.php?id=41 "download JBrowse-1.8.1.zip") - 3.3M * [JBrowse-1.8.1-dev.zip](http://jbrowse.org/wordpress/wp-content/plugins/download-monitor/download.php?id=42 "download JBrowse-1.8.1-dev.zip") - 28.6M Changes in this release: * Added support for `cigarAttribute` and `mdAttributes` configuration variables to Alignments and Alignments2 tracks, allowing users to change which feature attribute is used for showing mismatches (issue #200). * Fixed some bugs preventing `Alignments` and `Alignments2` tracks from working with non-BAM data backends. * Added `--trackLabel` and `--key` options to `prepare-refseqs.pl`, allowing users to specify the sequence track's label and title. * Added `--seqType` option to `prepare-refseqs.pl`, allowing users to specify the type of sequences being formatted, usually either 'dna', 'rna', or 'protein'. Additionally, if --seqType is something over than DNA (case insensitive), "showReverseStrand" is set to false on the reference sequence track. * Added a `shareURL` configuration option that accepts a JS function to assemble the URL that users will get when clicking the "Share" button or the "Full view" link in embedded mode (issue #198). * Fixed annoying bug in which popup feature detail boxes are initially scrolled all the way to the bottom.