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@gmod/jbrowse

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JBrowse - client-side genome browser

jbrowse.org

GMOD/jbrowse

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--- layout: post title: JBrowse 1.3.1 released date: 2012-04-19 tags: ["Software releases"] --- JBrowse 1.3.1 has been released, this is a minor release with fixes for some bugs found in 1.3.0. <dl><dt>[JBrowse-1.3.1-min.zip](/wordpress/wp-content/plugins/download-monitor/download.php?id=7 "download JBrowse 1.3.1 - min") - 2.0MB</dt><dd>Includes all that is needed for running JBrowse and formatting your own data.</dd><dt>[JBrowse-1.3.1-full.zip](/wordpress/wp-content/plugins/download-monitor/download.php?id=8 "download JBrowse 1.3.1 - full") - 4.7MB</dt><dd>Includes developer API documentation, developer test suites, additional sample data</dd></dl> ### **Changes in this release** * Fixed memory-management bug that caused way too much RAM to be used by FeatureTrack loading (flatfile, bam, and biodb-to-json.pl) when loading with very large numbers of reference sequences. Big thanks to Tristan Lubinski for help in isolating this. * Fixed some bugs in BAM support section of setup.sh autosetup script, thanks to Tristan Lubinski for help in isolating this as well. * Added an example document with an iframe running JBrowse in embedded mode in docs/examples/embedded_mode.html * flatfile-to-json.pl now loads the 'score' attribute of features in the JSON.