@gmod/jbrowse
Version:
JBrowse - client-side genome browser
217 lines (168 loc) • 17.5 kB
HTML
<!-- saved from url=(0067)http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html -->
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" version="XHTML+RDFa 1.0" dir="ltr" xmlns:content="http://purl.org/rss/1.0/modules/content/" xmlns:dc="http://purl.org/dc/terms/" xmlns:foaf="http://xmlns.com/foaf/0.1/" xmlns:og="http://ogp.me/ns#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:sioc="http://rdfs.org/sioc/ns#" xmlns:sioct="http://rdfs.org/sioc/types#" xmlns:skos="http://www.w3.org/2004/02/skos/core#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" class="js gr__knowpulse_usask_ca"><head profile="http://www.w3.org/1999/xhtml/vocab"><meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<link rel="shortcut icon" href="./drupal/TripalLogo.png" type="image/png">
<meta name="Generator" content="Drupal 7 (http://drupal.org)">
<title>Lorem ipsum | Tripal 2 Dev</title>
<script type="text/javascript" src="dist/main.bundle.js" charset="utf-8"></script>
<script type="text/javascript">
window.onerror=function(msg){
if( document.body )
document.body.setAttribute("JSError",msg);
}
</script>
<style type="text/css" media="all">
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/system/system.base.css");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/system/system.menus.css");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/system/system.messages.css");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/system/system.theme.css");
</style>
<style type="text/css" media="all">
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/contextual/contextual.css");
</style>
<style type="text/css" media="all">
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/comment/comment.css");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/field/theme/field.css");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/node/node.css");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/tripal/tripal_core/theme/css/tripal.css");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/tripal/tripal_feature/theme/css/tripal_feature.css");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/tripal/tripal_organism/theme/css/tripal_organism.css");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/user/user.css");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/views/css/views.css");
</style>
<style type="text/css" media="all">
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/ctools/css/ctools.css");
</style>
<style type="text/css" media="all">
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/bartik/css/layout.css?ob3579");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/bartik/css/style.css?ob3579");
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/bartik/css/colors.css?ob3579");
</style>
<style type="text/css" media="print">
@import url("http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/bartik/css/print.css?ob3579");
</style>
<!--[if lte IE 7]>
<link type="text/css" rel="stylesheet" href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/bartik/css/ie.css?ob3579" media="all" />
<![endif]-->
<!--[if IE 6]>
<link type="text/css" rel="stylesheet" href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal_theme/bartik/css/ie6.css?ob3579" media="all" />
<![endif]-->
<script type="text/javascript" src="./drupal/jquery.js"></script>
<script type="text/javascript" src="./drupal/jquery.once.js"></script>
<script type="text/javascript" src="./drupal/drupal.js"></script>
<script type="text/javascript" src="./drupal/contextual.js"></script>
<script type="text/javascript" src="./drupal/tripal.js"></script>
<script type="text/javascript" src="./drupal/tripal_feature.js"></script>
<script type="text/javascript">
<!--//--><![CDATA[//><!--
var baseurl = 'http://knowpulse.usask.ca/jbrowse/embedded-JBrowse';
var themedir = '';
var isClean = 1;
//--><!]]>
</script>
<script type="text/javascript">
<!--//--><![CDATA[//><!--
jQuery.extend(Drupal.settings, {"basePath":"\/jbrowse\/embedded-JBrowse\/drupal_theme\/","pathPrefix":"","ajaxPageState":{"theme":"bartik","theme_token":"7nuB3A0SOzkJSY2LFEnmmVZfpBcVxzJt8psSBD4uDro","js":{"misc\/jquery.js":1,"misc\/jquery.once.js":1,"misc\/drupal.js":1,"modules\/contextual\/contextual.js":1,"sites\/all\/modules\/admin_menu\/admin_devel\/admin_devel.js":1,"sites\/all\/modules\/tripal\/tripal_core\/theme\/js\/tripal.js":1,"sites\/all\/modules\/tripal\/tripal_feature\/theme\/js\/tripal_feature.js":1,"sites\/all\/modules\/admin_menu\/admin_menu.js":1,"sites\/all\/modules\/admin_menu\/admin_menu_toolbar\/admin_menu_toolbar.js":1,"0":1,"sites\/all\/modules\/devel\/devel_krumo_path.js":1},"css":{"modules\/system\/system.base.css":1,"modules\/system\/system.menus.css":1,"modules\/system\/system.messages.css":1,"modules\/system\/system.theme.css":1,"modules\/contextual\/contextual.css":1,"modules\/comment\/comment.css":1,"modules\/field\/theme\/field.css":1,"modules\/node\/node.css":1,"sites\/all\/modules\/tripal\/tripal_core\/theme\/css\/tripal.css":1,"sites\/all\/modules\/tripal\/tripal_feature\/theme\/css\/tripal_feature.css":1,"sites\/all\/modules\/tripal\/tripal_organism\/theme\/css\/tripal_organism.css":1,"modules\/user\/user.css":1,"sites\/all\/modules\/views\/css\/views.css":1,"sites\/all\/modules\/admin_menu\/admin_menu.css":1,"sites\/all\/modules\/admin_menu\/admin_menu.uid1.css":1,"sites\/all\/modules\/admin_menu\/admin_menu_toolbar\/admin_menu_toolbar.css":1,"modules\/shortcut\/shortcut.css":1,"sites\/all\/modules\/ctools\/css\/ctools.css":1,"themes\/bartik\/css\/layout.css":1,"themes\/bartik\/css\/style.css":1,"themes\/bartik\/css\/colors.css":1,"themes\/bartik\/css\/print.css":1,"themes\/bartik\/css\/ie.css":1,"themes\/bartik\/css\/ie6.css":1}},"tableHeaderOffset":"Drupal.admin.height","admin_menu":{"destination":"destination=node\/2002045","hash":"03bb49eb39fa2de4d85053e82f3bcb5f","basePath":"\/jbrowse\/embedded-JBrowse\/drupal_theme\/admin_menu","margin_top":1,"position_fixed":1,"toolbar":{"activeTrail":"\/jbrowse\/embedded-JBrowse\/"}}});
//--><!]]>
</script>
<script type="text/javascript" src="chrome-extension://hdokiejnpimakedhajhdlcegeplioahd/xhrExtension.js"></script>
</head>
<body class="html front logged-in one-sidebar sidebar-first page-node page-node- page-node-2002045 node-type-page" data-gr-c-s-loaded="true">
<div id="skip-link">
<a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html#main-content" class="element-invisible element-focusable">Skip to main content</a>
</div>
<div id="page-wrapper"><div id="page">
<div id="header" class="with-secondary-menu"><div class="section clearfix">
<a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse" title="Home" rel="home" id="logo">
<img src="./drupal/TripalLogo.png" alt="Home">
</a>
<div id="name-and-slogan">
<div id="site-name">
<strong>
<a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse" title="Home" rel="home"><span>Tripal 2 Dev</span></a>
</strong>
</div>
</div> <!-- /#name-and-slogan -->
<div id="main-menu" class="navigation">
<h2 class="element-invisible">Main menu</h2><ul id="main-menu-links" class="links clearfix"><li class="menu-219 first last active"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html" class="active">Home</a></li>
</ul> </div> <!-- /#main-menu -->
<div id="secondary-menu" class="navigation">
<h2 class="element-invisible">Secondary menu</h2><ul id="secondary-menu-links" class="links inline clearfix"><li class="menu-2 first"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html">My account</a></li>
<li class="menu-14 last"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html">Log out</a></li>
</ul> </div> <!-- /#secondary-menu -->
</div></div> <!-- /.section, /#header -->
<div id="main-wrapper" class="clearfix"><div id="main" class="clearfix">
<div id="sidebar-first" class="column sidebar"><div class="section">
<div class="region region-sidebar-first">
<div id="block-system-navigation" class="block block-system contextual-links-region block-menu">
<h2>Navigation</h2>
<div class="contextual-links-wrapper contextual-links-processed"><a class="contextual-links-trigger" href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html#">Configure</a><ul class="contextual-links"><li class="menu-list first"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html">List links</a></li>
<li class="menu-edit"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html">Edit menu</a></li>
<li class="block-configure last"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html">Configure block</a></li>
</ul></div>
<div class="content">
<ul class="menu clearfix"><li class="first collapsed"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html">Add content</a></li>
<li class="last expanded"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html" title="Listings of the various biological data available categorized by type.">Search Data</a><ul class="menu clearfix"><li class="first leaf"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html">Analyses</a></li>
<li class="leaf"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html" title="Contacts can be persons, institutes, groups, or organizations.">Contacts</a></li>
<li class="leaf"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html" title="A biological sequence or a section of a biological sequence, or a collection of such sections.">Features</a></li>
<li class="expanded"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html" title="Genetic variations such as SNPs, MNPs and indels.">Genotypes</a><ul class="menu clearfix"><li class="first last leaf"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html" title="Marker by Germplasm Genotypes Search for Lens species.">Lens Genotypes</a></li>
</ul></li>
<li class="leaf"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html" title="Any living biological entity, such as an animal, plant, fungus, or bacterium.">Organisms</a></li>
<li class="leaf"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html" title="A controlled sentence describing observable effects of non-wild type function.">Phenotypes</a></li>
<li class="leaf"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html" title="A project. Can be used for grouping data such as with the natural diversity module data.">Projects</a></li>
<li class="last leaf"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html" title="A stock is the physical entities of an organism, either living or preserved.">Stocks</a></li>
</ul></li>
</ul> </div>
</div>
</div>
</div></div> <!-- /.section, /#sidebar-first -->
<div id="content" class="column"><div class="section">
<a id="main-content"></a>
<h1 class="title" id="page-title">
Lorem ipsum </h1>
<div class="tabs">
<h2 class="element-invisible">Primary tabs</h2><ul class="tabs primary"><li class="active"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html" class="active">View<span class="element-invisible">(active tab)</span></a></li>
<li><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html">Edit</a></li>
<li><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html">Devel</a></li>
</ul> </div>
<div class="region region-content">
<div id="block-system-main" class="block block-system">
<div class="content">
<div id="node-2002045" class="node node-page node-full clearfix" about="" typeof="foaf:Document">
<span property="dc:title" content="Lorem ipsum" class="rdf-meta element-hidden"></span><span property="sioc:num_replies" content="0" datatype="xsd:integer" class="rdf-meta element-hidden"></span>
<div class="content clearfix">
<div class="field field-name-body field-type-text-with-summary field-label-hidden"><div class="field-items"><div class="field-item even" property="content:encoded">
<p>Lorem ipsum dolor sit amet, consectetur adipiscing elit. Pellentesque at porttitor enim. Ut tempor mattis dolor, eget cursus felis aliquet ut. Duis eu metus enim. Phasellus nec imperdiet justo, id congue libero. Fusce accumsan laoreet magna, ut condimentum est pharetra a. Fusce sit amet tellus varius, sagittis dolor eget, cursus leo. In hac habitasse platea dictumst. Aliquam velit enim, vulputate ut porttitor ut, luctus sit amet eros. Sed nec metus pretium, laoreet mi eu, suscipit dolor. Aliquam scelerisque hendrerit magna non semper. Donec in massa a libero consequat eleifend. Donec sollicitudin auctor nisl quis tempus. Quisque ullamcorper ac tellus eu interdum. Pellentesque rutrum ac dolor rhoncus convallis.</p>
<p>Ut malesuada placerat lectus. Ut tempus, orci eget vehicula ullamcorper, mauris est sollicitudin tellus, quis maximus purus ligula vitae dolor. Suspendisse dictum aliquet tellus non finibus. Praesent fringilla ante ac justo tempor, eget interdum libero pharetra. Nunc a tempus sem. Mauris mattis semper iaculis. Vestibulum vitae pretium nunc, ac sodales nunc. Sed euismod maximus elit non dictum. Praesent consectetur tempor sapien, vitae auctor metus imperdiet eget. Phasellus commodo turpis lacus, sit amet vehicula dui accumsan eu. Sed ac diam quam.</p>
<p>Maecenas malesuada malesuada dui nec euismod. Duis at volutpat ipsum, ut tristique mauris. Proin a neque in lacus feugiat posuere. In et posuere augue. Vivamus in mattis quam. Aenean dui mauris, malesuada sed placerat eget, molestie quis nulla. Duis eu urna purus.</p>
<p>Vestibulum at mi enim. Vivamus elementum sit amet mi eget elementum. Sed vel est at mauris ornare molestie nec suscipit nulla. Duis et cursus erat, et malesuada tellus. In semper vitae nisi mollis consequat. Aenean tincidunt augue lectus, at vehicula ante lobortis a. Fusce at elit dignissim, rhoncus purus quis, malesuada tellus. Nam id consectetur eros, in gravida arcu. Integer libero erat, imperdiet et volutpat sit amet, imperdiet sed nisi. Aliquam et iaculis sem. Morbi pulvinar erat in nisi convallis sodales. Morbi facilisis in felis ut dignissim. In blandit sed neque id consequat. Nunc efficitur fringilla malesuada. Aenean faucibus massa neque, a vulputate metus volutpat non. Donec interdum vitae turpis et auctor.</p>
<p>Ut vel accumsan libero. Nunc sodales nisi et accumsan euismod. Integer fermentum magna id urna interdum, sed hendrerit tortor pellentesque. Nulla a vehicula ipsum. Donec sed luctus sapien. Ut at augue imperdiet, aliquam risus eu, cursus nisi. Sed diam ipsum, rhoncus id elit nec, eleifend condimentum nisi. Suspendisse non erat vitae mauris maximus dapibus gravida sit amet sem. Phasellus diam lorem, viverra in nunc id, sollicitudin semper massa. Aenean ornare ipsum mauris, vel tempor ipsum dictum accumsan. Duis consectetur lacinia eros, id varius diam sodales a. Vestibulum sed massa in mi fringilla tincidunt et at nibh. Quisque dictum maximus leo, nec pretium nunc lacinia sed.</p>
<div class="jbrowse" data-config='"baseUrl": "../"' id="GenomeBrowser" style="height: 600px; width: 100%; padding: 0; border: 1px solid #ccc">
<div id="LoadingScreen" style="padding: 50px;">
<h1>Loading...</h1>
</div>
</div>
<div style="display: none">JBrowseDefaultMainPage</div>
</div>
</div>
</div> </div>
</div>
</div>
</div>
</div>
</div></div> <!-- /.section, /#content -->
</div></div> <!-- /#main, /#main-wrapper -->
<div id="footer-wrapper"><div class="section">
<div id="footer" class="clearfix">
<div class="region region-footer">
<div id="block-system-powered-by" class="block block-system contextual-links-region">
<div class="contextual-links-wrapper contextual-links-processed"><a class="contextual-links-trigger" href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html#">Configure</a><ul class="contextual-links"><li class="block-configure first last"><a href="http://knowpulse.usask.ca/jbrowse/embedded-JBrowse/drupal-page.html">Configure block</a></li>
</ul></div>
<div class="content">
<span>Powered by <a href="https://www.drupal.org/">Drupal</a></span> </div>
</div>
</div>
</div> <!-- /#footer -->
</div></div> <!-- /.section, /#footer-wrapper -->
</div></div> <!-- /#page, /#page-wrapper -->
</body></html>