@gmod/jbrowse/src/JBrowse/Model/BGZip/VirtualOffset.js

JBrowse - client-side genome browser

/**
 * a virtual offset into a bgzipped file
 */
define([
         'JBrowse/Util'
       ],
       function( Util ) {

var VirtualOffset = Util.fastDeclare({
    constructor: function(b, o) {
        if( arguments.length >= 2 ) {
            this.block  = b;
            this.offset = o;
        }
        else {
            this._fromBytes( b );
        }
    },

    _fromBytes: function( ba, offset ) {
        offset = offset || 0;

        //console.log( 'readVob', offset );
        var block =
              ba[offset  ] * 0x10000000000
            + ba[offset+1] * 0x100000000
            + ba[offset+2] * 0x1000000
            + ba[offset+3] * 0x10000
            + ba[offset+4] * 0x100
            + ba[offset+5];
        var bint = (ba[offset+6] << 8) | ba[offset+7];
        if (block == 0 && bint == 0) {
            this.block = this.offset = null;
        } else {
            this.block = block;
            this.offset = bint;
        }
    },
    toString: function() {
        return '' + this.block + ':' + this.offset;
    },
    compareTo: function(b) {
        return this.block - b.block || this.offset - b.offset;
    },
    cmp: function(b) {
        return this.compareTo( b );
    }
});

return VirtualOffset;

});