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@gmod/jbrowse

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JBrowse - client-side genome browser

jbrowse.org

GMOD/jbrowse

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--- id: data_export title: Data export --- Starting with version 1.7.0, JBrowse users can export track data in a variety of formats for either specific regions, or for entire reference sequences. Export functionality can also be limited and disabled on a per-track basis using the configuration variables listed below. ## Data Formats Current supported export data formats are: - FASTA (sequence tracks) - GFF3 (all tracks) - bed (feature and alignment tracks) - bedGraph (wiggle tracks) - Wiggle (wiggle tracks) ## Export Configuration Each track in JBrowse that can export data supports the following configuration variables. |Option|Value| |------|-----| |`noExport`|If true, disable all data export functionality for this track. Default false.| |`maxExportSpan`|Maximum size of the a region, in bp, that can be exported from this track. Default 500 Kb.| |`maxExportFeatures`|Maximum number of features that can be exported from this track. If "Save track" is unexpectedly greyed out, inspect this setting. Default: 50000| |`maxFeatureSizeForUnderlyingRefSeq`|Maximum length of sequence to be displayed in the popup boxes. Default: 250kb|