@gmod/cram
Version:
read CRAM files with pure Javascript
7 lines • 139 kB
JavaScript
async function createHtsCodecsModule(moduleArg={}){var Module=moduleArg;var g=!!globalThis.WorkerGlobalScope,k="";if(globalThis.window||g)try{new URL(".",k)}catch{}var l=console.log.bind(console),m=console.error.bind(console),n=!1,p;function q(a){for(var c=0,d=a.length,b=new Uint8Array(d),f;c<d;++c)f=a.charCodeAt(c),b[c]=~f>>8&f;return b}function r(){if(!t?.buffer?.v){a:{try{var a=v.toResizableBuffer();break a}catch{}a=v.buffer}t=new Int8Array(a);w=new Int16Array(a);Module.HEAPU8=x=new Uint8Array(a);new Uint16Array(a);Module.HEAP32=y=new Int32Array(a);z=
new Uint32Array(a);C=new Float32Array(a);D=new Float64Array(a);E=new BigInt64Array(a);new BigUint64Array(a)}}function F(){var a=Module.preRun;a&&(typeof a=="function"&&(a=[a]),G.push(...a));for(a=G;a.length>0;)a.shift()(Module)}function H(){var a=Module.postRun;a&&(typeof a=="function"&&(a=[a]),I.push(...a));for(a=I;a.length>0;)a.shift()(Module)}function J(a){Module.onAbort?.(a);a=`Aborted(${a})`;m(a);n=!0;throw new WebAssembly.RuntimeError(a+". Build with -sASSERTIONS for more info.");}var K;async function L(a){return a}
async function M(a){var c=K;try{var d=await L(c);return await WebAssembly.instantiate(d,a)}catch(b){m(`failed to asynchronously prepare wasm: ${b}`),J(b)}}async function N(a){return M(a)}class O{name="ExitStatus";constructor(a){this.message=`Program terminated with exit(${a})`;this.status=a}}var w,y,E,t,C,D,z,x,I=[],G=[],Q=!0,R=0,S={},T=a=>{if(!(a instanceof O||a=="unwind"))throw a;},U=a=>{p=a;Q||R>0||(Module.onExit?.(a),n=!0);throw new O(a);},V=a=>{if(!n)try{a()}catch(c){T(c)}finally{if(!(Q||R>0))try{p=
a=p,U(a)}catch(c){T(c)}}},W=[null,[],[]],aa=new TextDecoder;Module.noExitRuntime&&(Q=Module.noExitRuntime);Module.print&&(l=Module.print);Module.printErr&&(m=Module.printErr);var X=Module.preInit;if(X)for(typeof X=="function"&&(Module.preInit=X=[X]);X.length>0;)X.shift()();Module.getValue=function(a,c="i8"){c.endsWith("*")&&(c="*");switch(c){case "i1":return t[a];case "i8":return t[a];case "i16":return w[a>>1];case "i32":return y[a>>2];case "i64":return E[a>>3];case "float":return C[a>>2];case "double":return D[a>>
3];case "*":return z[a>>2];default:J(`invalid type for getValue: ${c}`)}};var Y,v,da={e:()=>J(""),d:()=>{Q=!1;R=0},a:(a,c)=>{S[a]&&(clearTimeout(S[a].id),delete S[a]);if(!c)return 0;var d=setTimeout(()=>{delete S[a];V(()=>Y(a,performance.now()))},c);S[a]={id:d,u:c};return 0},b:a=>{var c=x.length;a>>>=0;if(a>2147483648)return!1;for(var d=1;d<=4;d*=2){var b=c*(1+.2/d);b=Math.min(b,a+100663296);a:{b=(Math.min(2147483648,Math.ceil(Math.max(a,b)/65536)*65536)-v.buffer.byteLength+65535)/65536|0;try{v.grow(b);
r();var f=1;break a}catch(A){}f=void 0}if(f)return!0}return!1},g:a=>{p=a;U(a)},f:(a,c,d,b)=>{for(var f=0,A=0;A<d;A++){var ba=z[c>>2],P=z[c+4>>2];c+=8;for(var B=0;B<P;B++){var u=a,e=x[ba+B],h=W[u];if(e===0||e===10){u=u===1?l:m;e=0;for(var ca=e+NaN;h[e]&&!(e>=ca);)++e;e=aa.decode(h.buffer?h.subarray(0,e):new Uint8Array(h.slice(0,e)));u(e);h.length=0}else h.push(e)}f+=P}z[b>>2]=f;return 0},c:U},Z;Z=await (async function(){function a(b){b=Z=b.exports;Module._malloc=b.j;Module._free=b.k;Module._arith_uncompress=
b.l;Module._fqz_decompress=b.m;Module._rans_uncompress=b.n;Module._rans_uncompress_4x16=b.o;Module._tok3_decode_names=b.p;Module._bz2_uncompress=b.q;Module._zlib_uncompress=b.r;Module._batch_itf8_decode=b.s;Y=b.t;v=b.h;r();return Z}var c={a:da},d=Module.instantiateWasm;if(d)return new Promise(b=>{d(c,f=>b(a(f)))});K??=q('