@gmod/cram/esm/cramFile/encoding.d.ts

read CRAM files with pure Javascript

export interface NullEncoding {
    codecId: 0;
    parametersBytes: number;
    parameters: Record<string, never>;
}
export interface ExternalCramEncoding {
    codecId: 1;
    parametersBytes: number;
    parameters: {
        blockContentId: number;
    };
}
export interface GolombEncoding {
    codecId: 2;
    parametersBytes: number;
    parameters: {
        offset: number;
        M: number;
    };
}
export interface HuffmanEncoding {
    codecId: 3;
    parametersBytes: number;
    parameters: {
        numCodes: number;
        symbols: number[];
        numLengths: number;
        bitLengths: number[];
    };
}
export interface ByteArrayLengthEncoding {
    codecId: 4;
    parametersBytes: number;
    parameters: {
        lengthsEncoding: CramEncoding;
        valuesEncoding: CramEncoding;
    };
}
export interface ByteArrayStopCramEncoding {
    codecId: 5;
    parametersBytes: number;
    parameters: {
        stopByte: number;
        blockContentId: number;
    };
}
export interface BetaEncoding {
    codecId: 6;
    parametersBytes: number;
    parameters: {
        offset: number;
        length: number;
    };
}
export interface SubexpEncoding {
    codecId: 7;
    parametersBytes: number;
    parameters: {
        offset: number;
        K: number;
    };
}
export interface GolombRiceEncoding {
    codecId: 8;
    parametersBytes: number;
    parameters: {
        offset: number;
        log2m: number;
    };
}
export interface GammaEncoding {
    codecId: 9;
    parametersBytes: number;
    parameters: {
        offset: number;
    };
}
export type CramEncoding = NullEncoding | ExternalCramEncoding | GolombEncoding | HuffmanEncoding | ByteArrayLengthEncoding | ByteArrayStopCramEncoding | BetaEncoding | SubexpEncoding | GolombRiceEncoding | GammaEncoding;