@galaxyproject/vizarr/static/vizarr.xml

A visualization for Zarr-based images based on Vizarr.

<?xml version="1.0" encoding="UTF-8"?>
<visualization name="Vizarr Viewer" embeddable="true">
    <description>Display Zarr-Images like OME-Zarr</description>
    <tags>
        <tag>Zarr</tag>
        <tag>OME-Zarr</tag>
        <tag>Microscopy</tag>
    </tags>
    <entry_point entry_point_type="script" src="index.js" />
    <data_sources>
        <data_source>
            <model_class>HistoryDatasetAssociation</model_class>
            <test test_attr="ext" allow_uri_if_protocol="https,http">zarr</test>
            <test test_attr="ext" allow_uri_if_protocol="https,http">ome_zarr</test>
        </data_source>
    </data_sources>
    <params>
        <param required="true">dataset_id</param>
    </params>
    <help format="markdown"><![CDATA[
# What is the Vizarr Viewer?

Vizarr Viewer allows you to explore Zarr-based image datasets, including OME-Zarr microscopy data, directly in your browser.

After selecting a dataset, the multiscale image will be displayed with smooth zooming and panning capabilities.

## Key Features

- **Zarr and OME-Zarr Support**: Load standard Zarr-based images for scalable visualization.
- **Multiscale Navigation**: Effortlessly zoom and pan through very large images.
- **Lightweight and Fast**: Optimized for fast viewing even with large, high-resolution data.
- **Microscopy Ready**: Tailored for scientific imaging workflows, including 3D imaging and multiplexed data.

This tool is ideal for researchers working with large-scale microscopy, imaging, or spatial omics data.

To learn more about Vizarr, visit:
[https://github.com/hms-dbmi/vizarr](https://github.com/hms-dbmi/vizarr)
    ]]></help>
</visualization>