@edsilv/ami.js
Version:
<p align="center"> <img src="https://user-images.githubusercontent.com/214063/46479857-4cd66e80-c7f0-11e8-9585-5748409c9490.png" width="60%"> </p>
185 lines (161 loc) • 4.32 kB
JavaScript
/* globals Stats*/
import ControlsTrackball from 'base/controls/controls.trackball';
import HelpersStack from 'base/helpers/helpers.stack';
import LoadersVolume from 'base/loaders/loaders.volume';
// standard global variables
let controls;
let renderer;
let stats;
let scene;
let camera;
let stackHelper;
let threeD;
function render() {
if (stackHelper) {
stackHelper.index += 1;
if (stackHelper.outOfBounds === true) {
stackHelper.orientation = (stackHelper.orientation + 1) % 3;
stackHelper.index = 0;
}
}
controls.update();
renderer.render(scene, camera);
stats.update();
}
function init() {
// this function is executed on each animation frame
function animate() {
render();
// request new frame
requestAnimationFrame(function() {
animate();
});
}
// renderer
threeD = document.getElementById('r3d');
renderer = new THREE.WebGLRenderer({
antialias: true,
});
renderer.setSize(threeD.offsetWidth, threeD.offsetHeight);
renderer.setClearColor(0x673ab7, 1);
renderer.setPixelRatio(window.devicePixelRatio);
threeD.appendChild(renderer.domElement);
// stats
stats = new Stats();
threeD.appendChild(stats.domElement);
// scene
scene = new THREE.Scene();
// camera
camera = new THREE.PerspectiveCamera(45, threeD.offsetWidth / threeD.offsetHeight, 1, 10000000);
camera.position.x = 250;
camera.position.y = 250;
camera.position.z = 250;
// controls
controls = new ControlsTrackball(camera, threeD);
controls.rotateSpeed = 1.4;
controls.zoomSpeed = 1.2;
controls.panSpeed = 0.8;
animate();
}
window.onload = function() {
// init threeJS...
init();
// instantiate the loader
// it loads and parses the dicom image
let loader = new LoadersVolume(threeD);
let t2 = [
'36444280',
'36444294',
'36444308',
// '36444322',
// '36444336',
// '36444350',
// '36444364',
// '36444378',
// '36444392',
// '36444406',
// '36748256',
// '36444434',
// '36444448',
// '36444462',
// '36444476',
// '36444490',
// '36444504',
// '36444518',
// '36444532',
// '36746856',
// '36746870',
// '36746884',
// '36746898',
// '36746912',
// '36746926',
// '36746940',
// '36746954',
// '36746968',
// '36746982',
// '36746996',
// '36747010',
// '36747024',
// '36748200',
// '36748214',
// '36748228',
// '36748270',
// '36748284',
// '36748298',
// '36748312',
// '36748326',
// '36748340',
// '36748354',
// '36748368',
// '36748382',
// '36748396',
// '36748410',
// '36748424',
// '36748438',
// '36748452',
// '36748466',
// '36748480',
// '36748494',
// '36748508',
// '36748522',
// '36748242',
];
let files = t2.map(function(v) {
return 'https://cdn.rawgit.com/FNNDSC/data/master/dicom/adi_brain/' + v;
});
// load sequence for all files
loader
.load(files)
.then(function() {
// make a proper function for this guy...
let series = loader.data[0].mergeSeries(loader.data)[0];
let stack = series.stack[0];
stackHelper = new HelpersStack(stack);
stackHelper.bbox.color = 0xf9f9f9;
stackHelper.border.color = 0xf9f9f9;
scene.add(stackHelper);
// update camrea's and control's target
let centerLPS = stackHelper.stack.worldCenter();
camera.lookAt(centerLPS.x, centerLPS.y, centerLPS.z);
camera.updateProjectionMatrix();
controls.target.set(centerLPS.x, centerLPS.y, centerLPS.z);
loader.free();
loader = null;
function onWindowResize() {
camera.aspect = window.innerWidth / window.innerHeight;
camera.updateProjectionMatrix();
renderer.setSize(window.innerWidth, window.innerHeight);
}
window.addEventListener('resize', onWindowResize, false);
// force 1st render
render();
// notify puppeteer to take screenshot
const puppetDiv = document.createElement('div');
puppetDiv.setAttribute('id', 'puppeteer');
document.body.appendChild(puppetDiv);
})
.catch(function(error) {
window.console.log('oops... something went wrong...');
window.console.log(error);
});
};