@cyanheads/pubmed-mcp-server
Version:
Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP.
60 lines • 2.86 kB
TypeScript
/**
* @fileoverview PubMed citation tool — generates formatted citations (APA, MLA,
* BibTeX, RIS) for one or more PubMed articles.
* @module src/mcp-server/tools/definitions/format-citations.tool
*/
import { z } from '@cyanheads/mcp-ts-core';
export declare const formatCitationsTool: import("@cyanheads/mcp-ts-core").ToolDefinition<z.ZodObject<{
pmids: z.ZodArray<z.ZodString>;
format: z.ZodDefault<z.ZodUnion<readonly [z.ZodEnum<{
apa: "apa";
mla: "mla";
bibtex: "bibtex";
ris: "ris";
}>, z.ZodArray<z.ZodEnum<{
apa: "apa";
mla: "mla";
bibtex: "bibtex";
ris: "ris";
}>>]>>;
}, z.core.$strip>, z.ZodObject<{
citations: z.ZodArray<z.ZodObject<{
pmid: z.ZodString;
title: z.ZodOptional<z.ZodString>;
citations: z.ZodRecord<z.ZodString, z.ZodString>;
}, z.core.$strip>>;
totalSubmitted: z.ZodNumber;
totalFormatted: z.ZodNumber;
unavailablePmids: z.ZodOptional<z.ZodArray<z.ZodString>>;
}, z.core.$strip>, readonly [{
readonly reason: "queue_full";
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.RateLimited;
readonly when: "Local NCBI request queue is at capacity.";
readonly recovery: "Retry after 1-2 seconds; the request queue hit the NCBI rate limit.";
readonly retryable: true;
}, {
readonly reason: "ncbi_unreachable";
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.ServiceUnavailable;
readonly when: "NCBI E-utilities is unreachable after all retry attempts.";
readonly recovery: "Retry after a brief delay; NCBI was unreachable across all retry attempts.";
readonly retryable: true;
}, {
readonly reason: "ncbi_deadline_exceeded";
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.Timeout;
readonly when: "Total request deadline expired before NCBI returned a response.";
readonly recovery: "Reduce batch size or retry; NCBI may be under temporary load.";
readonly retryable: true;
}, {
readonly reason: "ncbi_invalid_response";
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.SerializationError;
readonly when: "NCBI returned a body that could not be parsed (invalid XML/JSON).";
readonly recovery: "Retry the request; NCBI returned a malformed response that could not be parsed.";
readonly retryable: true;
}, {
readonly reason: "ncbi_resource_not_found";
readonly code: import("@cyanheads/mcp-ts-core/errors").JsonRpcErrorCode.NotFound;
readonly when: "NCBI returned a structured \"not found\" error for the requested ID(s).";
readonly recovery: "Verify the ID exists in PubMed; the resource was not found in NCBI and retrying will not help.";
readonly retryable: false;
}]>;
//# sourceMappingURL=format-citations.tool.d.ts.map