@cyanheads/pubmed-mcp-server
Version:
Production-ready PubMed Model Context Protocol (MCP) server that empowers AI agents and research tools with comprehensive access to PubMed's article database. Enables advanced, automated LLM workflows for searching, retrieving, analyzing, and visualizing
112 lines • 6.34 kB
TypeScript
/**
* @fileoverview Defines the Zod input schema and TypeScript types for the pubmed_research_agent tool.
* This schema accepts detailed components of a research plan from the client,
* which the tool will then structure into a standardized output format.
* @module pubmedResearchAgent/logic/inputSchema
*/
import { z } from "zod";
export declare const PubMedResearchAgentInputSchema: z.ZodObject<{
project_title_suggestion: z.ZodString;
primary_research_goal: z.ZodString;
research_keywords: z.ZodArray<z.ZodString, "many">;
organism_focus: z.ZodOptional<z.ZodString>;
p1_introduction_and_background: z.ZodOptional<z.ZodString>;
p1_specific_research_question: z.ZodOptional<z.ZodString>;
p1_knowledge_gap: z.ZodOptional<z.ZodString>;
p1_primary_hypothesis: z.ZodOptional<z.ZodString>;
p1_secondary_questions_or_hypotheses: z.ZodOptional<z.ZodArray<z.ZodString, "many">>;
p1_pubmed_search_strategy_description: z.ZodOptional<z.ZodString>;
p1_literature_review_scope: z.ZodOptional<z.ZodString>;
p1_lit_review_databases_and_approach: z.ZodOptional<z.ZodString>;
p1_experimental_paradigm: z.ZodOptional<z.ZodString>;
p1_data_acquisition_plan_existing_data: z.ZodOptional<z.ZodString>;
p1_data_acquisition_plan_new_data: z.ZodOptional<z.ZodString>;
p1_blast_utilization_plan: z.ZodOptional<z.ZodString>;
p1_controls_and_rigor: z.ZodOptional<z.ZodString>;
p1_methodological_challenges_and_mitigation: z.ZodOptional<z.ZodString>;
p2_data_collection_methods_wet_lab: z.ZodOptional<z.ZodString>;
p2_data_collection_methods_dry_lab: z.ZodOptional<z.ZodString>;
p2_data_preprocessing_and_qc_plan: z.ZodOptional<z.ZodString>;
p3_data_analysis_strategy: z.ZodOptional<z.ZodString>;
p3_bioinformatics_pipeline_summary: z.ZodOptional<z.ZodString>;
p3_results_interpretation_framework: z.ZodOptional<z.ZodString>;
p3_comparison_with_literature_plan: z.ZodOptional<z.ZodString>;
p4_dissemination_manuscript_plan: z.ZodOptional<z.ZodString>;
p4_dissemination_data_deposition_plan: z.ZodOptional<z.ZodString>;
p4_peer_review_and_publication_approach: z.ZodOptional<z.ZodString>;
p4_future_research_directions: z.ZodOptional<z.ZodString>;
cc_record_keeping_and_data_management: z.ZodOptional<z.ZodString>;
cc_collaboration_strategy: z.ZodOptional<z.ZodString>;
cc_ethical_considerations: z.ZodOptional<z.ZodString>;
include_detailed_prompts_for_agent: z.ZodDefault<z.ZodOptional<z.ZodBoolean>>;
}, "strip", z.ZodTypeAny, {
project_title_suggestion: string;
primary_research_goal: string;
research_keywords: string[];
include_detailed_prompts_for_agent: boolean;
organism_focus?: string | undefined;
p1_introduction_and_background?: string | undefined;
p1_specific_research_question?: string | undefined;
p1_knowledge_gap?: string | undefined;
p1_primary_hypothesis?: string | undefined;
p1_secondary_questions_or_hypotheses?: string[] | undefined;
p1_pubmed_search_strategy_description?: string | undefined;
p1_literature_review_scope?: string | undefined;
p1_lit_review_databases_and_approach?: string | undefined;
p1_experimental_paradigm?: string | undefined;
p1_data_acquisition_plan_existing_data?: string | undefined;
p1_data_acquisition_plan_new_data?: string | undefined;
p1_blast_utilization_plan?: string | undefined;
p1_controls_and_rigor?: string | undefined;
p1_methodological_challenges_and_mitigation?: string | undefined;
p2_data_collection_methods_wet_lab?: string | undefined;
p2_data_collection_methods_dry_lab?: string | undefined;
p2_data_preprocessing_and_qc_plan?: string | undefined;
p3_data_analysis_strategy?: string | undefined;
p3_bioinformatics_pipeline_summary?: string | undefined;
p3_results_interpretation_framework?: string | undefined;
p3_comparison_with_literature_plan?: string | undefined;
p4_dissemination_manuscript_plan?: string | undefined;
p4_dissemination_data_deposition_plan?: string | undefined;
p4_peer_review_and_publication_approach?: string | undefined;
p4_future_research_directions?: string | undefined;
cc_record_keeping_and_data_management?: string | undefined;
cc_collaboration_strategy?: string | undefined;
cc_ethical_considerations?: string | undefined;
}, {
project_title_suggestion: string;
primary_research_goal: string;
research_keywords: string[];
organism_focus?: string | undefined;
p1_introduction_and_background?: string | undefined;
p1_specific_research_question?: string | undefined;
p1_knowledge_gap?: string | undefined;
p1_primary_hypothesis?: string | undefined;
p1_secondary_questions_or_hypotheses?: string[] | undefined;
p1_pubmed_search_strategy_description?: string | undefined;
p1_literature_review_scope?: string | undefined;
p1_lit_review_databases_and_approach?: string | undefined;
p1_experimental_paradigm?: string | undefined;
p1_data_acquisition_plan_existing_data?: string | undefined;
p1_data_acquisition_plan_new_data?: string | undefined;
p1_blast_utilization_plan?: string | undefined;
p1_controls_and_rigor?: string | undefined;
p1_methodological_challenges_and_mitigation?: string | undefined;
p2_data_collection_methods_wet_lab?: string | undefined;
p2_data_collection_methods_dry_lab?: string | undefined;
p2_data_preprocessing_and_qc_plan?: string | undefined;
p3_data_analysis_strategy?: string | undefined;
p3_bioinformatics_pipeline_summary?: string | undefined;
p3_results_interpretation_framework?: string | undefined;
p3_comparison_with_literature_plan?: string | undefined;
p4_dissemination_manuscript_plan?: string | undefined;
p4_dissemination_data_deposition_plan?: string | undefined;
p4_peer_review_and_publication_approach?: string | undefined;
p4_future_research_directions?: string | undefined;
cc_record_keeping_and_data_management?: string | undefined;
cc_collaboration_strategy?: string | undefined;
cc_ethical_considerations?: string | undefined;
include_detailed_prompts_for_agent?: boolean | undefined;
}>;
export type PubMedResearchAgentInput = z.infer<typeof PubMedResearchAgentInputSchema>;
//# sourceMappingURL=inputSchema.d.ts.map